RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 ZFPM2Q8WW38 1151 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 RADILQ96JH8 1075 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 CMTM3Q96MX0 182 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 ABHD14AQ9BUJ0 271 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 MXD3Q9BW11 206 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 MRPL1Q9BYD6 325 aaKnown RBP4.26□□□□□ -1.73
HMGB3-203ENST00000430118 ZNF341Q9BYN7 854 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 KRTAP4-9Q9BYQ8 210 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 EDEM3Q9BZQ6 932 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 RABEP2Q9H5N1 569 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 FBRSL1Q9HCM7 1045 aaKnown RBP4.26□□□□□ -1.73
HMGB3-203ENST00000430118 SLC35C2Q9NQQ7 365 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 PCDHB16Q9NRJ7 776 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 GIMAP4Q9NUV9 329 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 ASNSD1Q9NWL6 643 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 CWC25Q9NXE8 425 aaPredicted RBP4.26□□□□□ -1.73
HMGB3-203ENST00000430118 DHDHQ9UQ10 334 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 ADAM18Q9Y3Q7 739 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 SESN1Q9Y6P5 492 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 PRUNE2Q8WUY3 3088 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 DDX60LQ5H9U9 1706 aaKnown RBP4.26□□□□□ -1.73
HMGB3-203ENST00000430118 ARAP2Q8WZ64 1704 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 ZSWIM8A7E2V4 1837 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 A0A1W2PQF6 199 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 EIF3CLB5ME19 914 aaKnown RBP4.25□□□□□ -1.73
HMGB3-203ENST00000430118 CLIC1O00299 241 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 SH2B2O14492 632 aaPredicted RBP4.25□□□□□ -1.73
HMGB3-203ENST00000430118 USP12O75317 370 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 IPO7O95373 1038 aaKnown RBP4.25□□□□□ -1.73
HMGB3-203ENST00000430118 TUBB4AP04350 444 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 HEXAP06865 529 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 HSPA5P11021 654 aaKnown RBP4.25□□□□□ -1.73
HMGB3-203ENST00000430118 ATF7P17544 494 aaPredicted RBP4.25□□□□□ -1.73
HMGB3-203ENST00000430118 SAT1P21673 171 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 FPR3P25089 353 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 POU1F1P28069 291 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 TYK2P29597 1187 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 PTGER1P34995 402 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 LMAN1P49257 510 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 CCT8P50990 548 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 COPB1P53618 953 aaKnown RBP4.25□□□□□ -1.73
HMGB3-203ENST00000430118 CDH8P55286 799 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 MRPS5P82675 430 aaKnown RBP4.25□□□□□ -1.73
HMGB3-203ENST00000430118 RHAGQ02094 409 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 SHBQ15464 509 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 NTRK2Q16620 822 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 HIST2H2ACQ16777 129 aaPredicted RBP4.25□□□□□ -1.73
HMGB3-203ENST00000430118 PROSER3Q2NL68 480 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 PLK5Q496M5 336 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 PCID2Q5JVF3 399 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 SERTAD4-AS1Q5TG53 156 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 FAM171A1Q5VUB5 890 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 GARNL3Q5VVW2 1013 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 ARMC3Q5W041 872 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 TXNDC8Q6A555 127 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 TTI2Q6NXR4 508 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 KCNV1Q6PIU1 500 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 SLC30A9Q6PML9 568 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 ZNF474Q6S9Z5 364 aaPredicted RBP4.25□□□□□ -1.73
HMGB3-203ENST00000430118 FAM160B2Q86V87 743 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 KLBQ86Z14 1044 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 GHDCQ8N2G8 530 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 C17orf53Q8N3J3 647 aaPredicted RBP4.25□□□□□ -1.73
HMGB3-203ENST00000430118 OTUD6BQ8N6M0 293 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 SCAIQ8N9R8 606 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.25□□□□□ -1.73
HMGB3-203ENST00000430118 FAM47BQ8NA70 645 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 CHST13Q8NET6 341 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 CACTINQ8WUQ7 758 aaKnown RBP4.25□□□□□ -1.73
HMGB3-203ENST00000430118 TFAP2BQ92481 460 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 DAZAP1Q96EP5 407 aaKnown RBP4.25□□□□□ -1.73
HMGB3-203ENST00000430118 CNDP2Q96KP4 475 aaKnown RBP4.25□□□□□ -1.73
HMGB3-203ENST00000430118 NCAPGQ9BPX3 1015 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 CIPCQ9C0C6 399 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 ERVMER34-1Q9H9K5 563 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 SCPEP1Q9HB40 452 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 Q9N2J8 555 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 ATP8A2Q9NTI2 1148 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 GRHL1Q9NZI5 618 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 INTS6Q9UL03 887 aaKnown RBP4.25□□□□□ -1.73
HMGB3-203ENST00000430118 A4GNTQ9UNA3 340 aa4.25□□□□□ -1.73
HMGB3-203ENST00000430118 FNDC1Q4ZHG4 1894 aaPredicted RBP4.24□□□□□ -1.73
HMGB3-203ENST00000430118 FAM237BA0A1B0GVD1 139 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 GLOD5A6NK44 160 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 TCP10L2B9ZVM9 353 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 USP17L23D6RBM5 183 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 TULP2O00295 520 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 UBE2CO00762 179 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 CXCL11O14625 94 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 HNRNPCL1O60812 293 aaKnown RBP4.24□□□□□ -1.73
HMGB3-203ENST00000430118 TACC1O75410 805 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 PDE8BO95263 885 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 ADAP00813 363 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 EBLN1P0CF75 366 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 AKR1A1P14550 325 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 PTPN2P17706 415 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 EEF1DP29692 281 aaKnown RBP4.24□□□□□ -1.73
HMGB3-203ENST00000430118 PBX3P40426 434 aa4.24□□□□□ -1.73
HMGB3-203ENST00000430118 SSR1P43307 286 aaKnown RBP4.24□□□□□ -1.73
HMGB3-203ENST00000430118 VPS41P49754 854 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms