RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 ENTPD7Q9NQZ7 604 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 VTI1BQ9UEU0 232 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 TAF1LQ8IZX4 1826 aa11.96□□□□□ -0.49
HMGB1-206ENST00000405805 GUCA1CO95843 209 aa11.96□□□□□ -0.49
HMGB1-206ENST00000405805 ATP5F1P24539 256 aaPredicted RBP11.96□□□□□ -0.49
HMGB1-206ENST00000405805 SCNN1GP51170 649 aa11.96□□□□□ -0.49
HMGB1-206ENST00000405805 GEMP55040 296 aa11.96□□□□□ -0.49
HMGB1-206ENST00000405805 RAB14P61106 215 aa11.96□□□□□ -0.49
HMGB1-206ENST00000405805 NRG1Q02297 640 aaPredicted RBP11.96□□□□□ -0.49
HMGB1-206ENST00000405805 DGCR6Q14129 220 aa11.96□□□□□ -0.49
HMGB1-206ENST00000405805 MYLK3Q32MK0 819 aa11.96□□□□□ -0.49
HMGB1-206ENST00000405805 ARHGAP36Q6ZRI8 547 aa11.96□□□□□ -0.49
HMGB1-206ENST00000405805 CYP4V2Q6ZWL3 525 aaPredicted RBP11.96□□□□□ -0.49
HMGB1-206ENST00000405805 ZFP28Q8NHY6 868 aa11.96□□□□□ -0.49
HMGB1-206ENST00000405805 RSPH1Q8WYR4 309 aa11.96□□□□□ -0.49
HMGB1-206ENST00000405805 C17orf80Q9BSJ5 609 aa11.96□□□□□ -0.49
HMGB1-206ENST00000405805 COLEC11Q9BWP8 271 aa11.96□□□□□ -0.49
HMGB1-206ENST00000405805 MOCS1Q9NZB8 636 aa11.96□□□□□ -0.49
HMGB1-206ENST00000405805 TBC1D14Q9P2M4 693 aa11.96□□□□□ -0.49
HMGB1-206ENST00000405805 PRPF19Q9UMS4 504 aaKnown RBP11.96□□□□□ -0.49
HMGB1-206ENST00000405805 CDK5RAP2Q96SN8 1893 aa11.96□□□□□ -0.49
HMGB1-206ENST00000405805 H0YC42 278 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 H3BMM5 538 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 NRP2O60462 931 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 SNNO75324 88 aaPredicted RBP11.96□□□□□ -0.5
HMGB1-206ENST00000405805 PRKCGP05129 697 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 MTHFD1P11586 935 aaKnown RBP11.96□□□□□ -0.5
HMGB1-206ENST00000405805 BRCC3P46736 316 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 RELAQ04206 551 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 LRP8Q14114 963 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 IMPG1Q17R60 797 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 ZRANB3Q5FWF4 1079 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 SAMD4BQ5PRF9 694 aaKnown RBP11.96□□□□□ -0.5
HMGB1-206ENST00000405805 RBM20Q5T481 1227 aaKnown RBP11.96□□□□□ -0.5
HMGB1-206ENST00000405805 FBXL19Q6PCT2 694 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 PGAM4Q8N0Y7 254 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 CENPSQ8N2Z9 138 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 ZNF276Q8N554 614 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 FIG4Q92562 907 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 VPS33AQ96AX1 596 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 ULK4Q96C45 1275 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 CYP2S1Q96SQ9 504 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 SENP6Q9GZR1 1112 aaPredicted RBP11.96□□□□□ -0.5
HMGB1-206ENST00000405805 SACM1LQ9NTJ5 587 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 TRAF6Q9Y4K3 522 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 U3KQV3 271 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 TCRBV5S1A1TA0A578 114 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 CCNT2O60583 730 aaKnown RBP11.96□□□□□ -0.5
HMGB1-206ENST00000405805 OR4Q2P0C623 313 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 SPATA31D3P0C874 917 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 FMO4P31512 558 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 FCHO2Q0JRZ9 810 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 TIGD2Q4W5G0 525 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 PCID2Q5JVF3 399 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 GNASQ5JWF2 1037 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 SPATA31D4Q6ZUB0 917 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 ELMOD2Q8IZ81 293 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 DEPDC4Q8N2C3 294 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 TERB1Q8NA31 727 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 BPIFB6Q8NFQ5 453 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 FBXO30Q8TB52 745 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 FNDC8Q8TC99 324 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 TSPAN17Q96FV3 270 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 SORT1Q99523 831 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 SLC25A23Q9BV35 468 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 NSMCE4AQ9NXX6 385 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 GMPR2Q9P2T1 348 aaKnown RBP11.96□□□□□ -0.5
HMGB1-206ENST00000405805 PTGDR2Q9Y5Y4 395 aa11.96□□□□□ -0.5
HMGB1-206ENST00000405805 MAGEB16A2A368 324 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 A8MX80 341 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 SH3BGRLO75368 114 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 NAT2P11245 290 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 PIK3CGP48736 1102 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 HUNKP57058 714 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 TWF1Q12792 350 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 PPIL2Q13356 520 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 PTPRCAPQ14761 206 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 PAGE2BQ5JRK9 111 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 EPGNQ6UW88 154 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 STRADAQ7RTN6 431 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 HDDC2Q7Z4H3 204 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 DHRSXQ8N5I4 330 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 KCTD14Q9BQ13 255 aaPredicted RBP11.95□□□□□ -0.5
HMGB1-206ENST00000405805 STN1Q9H668 368 aaKnown RBP11.95□□□□□ -0.5
HMGB1-206ENST00000405805 PNPLA8Q9NP80 782 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 ZMYM5Q9UJ78 669 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 FZD10Q9ULW2 581 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 ZNF510Q9Y2H8 683 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 SBF2Q86WG5 1849 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 A0A1B0GTW7 788 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 GUCY1B2O75343 617 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 MLNP12872 115 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 BCAP31P51572 246 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 WNT3AP56704 352 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 TUBA3CQ13748 450 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 INSCQ1MX18 579 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 HSF5Q4G112 596 aaPredicted RBP11.95□□□□□ -0.5
HMGB1-206ENST00000405805 MARC1Q5VT66 337 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 PIWIL4Q7Z3Z4 852 aaKnown RBP11.95□□□□□ -0.5
HMGB1-206ENST00000405805 FAM35AQ86V20 835 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms