RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 MAP7D1Q3KQU3 841 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 TBCELQ5QJ74 424 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 FAM171BQ6P995 826 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 CLYBLQ8N0X4 340 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 PCYOX1LQ8NBM8 494 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 OR6P1Q8NGX9 317 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 HDAC10Q969S8 669 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 ZUFSPQ96AP4 578 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 SGIP1Q9BQI5 828 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 TRIM8Q9BZR9 551 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 SLC25A51Q9H1U9 297 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 NOL6Q9H6R4 1146 aaKnown RBP12.72□□□□□ -0.37
SHMT1-205ENST00000395684 RHBDL2Q9NX52 303 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 CRYL1Q9Y2S2 319 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 KCTD3Q9Y597 815 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 COL4A4P53420 1690 aaPredicted RBP12.72□□□□□ -0.37
SHMT1-205ENST00000395684 FXYD1O00168 92 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 HAS3O00219 553 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 TPST1O60507 370 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 CDK14O94921 469 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 CCR1P32246 355 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 CD86P42081 329 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 STT3AP46977 705 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 HERVK_113P63132 956 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 CAPRIN1Q14444 709 aaKnown RBP12.72□□□□□ -0.37
SHMT1-205ENST00000395684 BRMS1LQ5PSV4 323 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 MFSD2AQ8NA29 543 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 EXT2Q93063 718 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 IMP4Q96G21 291 aaKnown RBP12.72□□□□□ -0.37
SHMT1-205ENST00000395684 SLC45A3Q96JT2 553 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 PPP1R2P1Q96PQ5 205 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 KLHL5Q96PQ7 755 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 ERVK-6Q9BXR3 956 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 MUC3BQ9H195 1237 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 NT5MQ9NPB1 228 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 AGPAT4Q9NRZ5 378 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 OSER1Q9NX31 292 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 CMTM6Q9NX76 183 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 HACD3Q9P035 362 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 EBF1Q9UH73 591 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 DSEQ9UL01 958 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 HS3ST4Q9Y661 456 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 NYNRINQ9P2P1 1898 aaKnown RBP12.71□□□□□ -0.37
SHMT1-205ENST00000395684 DHRS12A0PJE2 317 aa12.71□□□□□ -0.37
SHMT1-205ENST00000395684 E9PAM4 449 aa12.71□□□□□ -0.37
SHMT1-205ENST00000395684 J3KR12 359 aa12.71□□□□□ -0.37
SHMT1-205ENST00000395684 STAMBPO95630 424 aa12.71□□□□□ -0.37
SHMT1-205ENST00000395684 SCNN1GP51170 649 aa12.71□□□□□ -0.37
SHMT1-205ENST00000395684 UPP1Q16831 310 aa12.71□□□□□ -0.37
SHMT1-205ENST00000395684 TLK2Q86UE8 772 aa12.71□□□□□ -0.37
SHMT1-205ENST00000395684 CAMK1DQ8IU85 385 aa12.71□□□□□ -0.37
SHMT1-205ENST00000395684 PHYKPLQ8IUZ5 450 aa12.71□□□□□ -0.37
SHMT1-205ENST00000395684 ZNF786Q8N393 782 aa12.71□□□□□ -0.37
SHMT1-205ENST00000395684 RTL3Q8N8U3 475 aaKnown RBP12.71□□□□□ -0.37
SHMT1-205ENST00000395684 HOPXQ9BPY8 73 aaPredicted RBP12.71□□□□□ -0.37
SHMT1-205ENST00000395684 FAM105AQ9NUU6 356 aa12.71□□□□□ -0.37
SHMT1-205ENST00000395684 GMEB1Q9Y692 573 aa12.71□□□□□ -0.37
SHMT1-205ENST00000395684 TANC1Q9C0D5 1861 aa12.71□□□□□ -0.37
SHMT1-205ENST00000395684 ARL5CA6NH57 179 aa12.71□□□□□ -0.38
SHMT1-205ENST00000395684 TRIM64CA6NLI5 447 aa12.71□□□□□ -0.38
SHMT1-205ENST00000395684 AQP12BA6NM10 295 aa12.71□□□□□ -0.38
SHMT1-205ENST00000395684 PIP5K1BO14986 540 aa12.71□□□□□ -0.38
SHMT1-205ENST00000395684 MAGEB3O15480 346 aa12.71□□□□□ -0.38
SHMT1-205ENST00000395684 SLC4A1P02730 911 aa12.71□□□□□ -0.38
SHMT1-205ENST00000395684 MMP2P08253 660 aa12.71□□□□□ -0.38
SHMT1-205ENST00000395684 SLC6A2P23975 617 aa12.71□□□□□ -0.38
SHMT1-205ENST00000395684 OXTRP30559 389 aa12.71□□□□□ -0.38
SHMT1-205ENST00000395684 ATP6V0D1P61421 351 aa12.71□□□□□ -0.38
SHMT1-205ENST00000395684 BEX3Q00994 111 aa12.71□□□□□ -0.38
SHMT1-205ENST00000395684 TIAL1Q01085 375 aaKnown RBP eCLIP12.71□□□□□ -0.38
SHMT1-205ENST00000395684 ITKQ08881 620 aa12.71□□□□□ -0.38
SHMT1-205ENST00000395684 SLC10A7Q0GE19 358 aa12.71□□□□□ -0.38
SHMT1-205ENST00000395684 LDLRAD1Q5T700 205 aa12.71□□□□□ -0.38
SHMT1-205ENST00000395684 INTS11Q5TA45 600 aaKnown RBP12.71□□□□□ -0.38
SHMT1-205ENST00000395684 KLHL35Q6PF15 583 aa12.71□□□□□ -0.38
SHMT1-205ENST00000395684 AQP12AQ8IXF9 295 aa12.71□□□□□ -0.38
SHMT1-205ENST00000395684 CMTR2Q8IYT2 770 aaKnown RBP12.71□□□□□ -0.38
SHMT1-205ENST00000395684 SCML4Q8N228 414 aa12.71□□□□□ -0.38
SHMT1-205ENST00000395684 RYBPQ8N488 228 aaPredicted RBP12.71□□□□□ -0.38
SHMT1-205ENST00000395684 SLC10A4Q96EP9 437 aa12.71□□□□□ -0.38
SHMT1-205ENST00000395684 HSPBAP1Q96EW2 488 aa12.71□□□□□ -0.38
SHMT1-205ENST00000395684 RPL10LQ96L21 214 aaKnown RBP12.71□□□□□ -0.38
SHMT1-205ENST00000395684 NSUN5Q96P11 429 aaKnown RBP12.71□□□□□ -0.38
SHMT1-205ENST00000395684 KCNA7Q96RP8 456 aa12.71□□□□□ -0.38
SHMT1-205ENST00000395684 ADI1Q9BV57 179 aa12.71□□□□□ -0.38
SHMT1-205ENST00000395684 TUBB1Q9H4B7 451 aa12.71□□□□□ -0.38
SHMT1-205ENST00000395684 DNAAF2Q9NVR5 837 aaKnown RBP12.71□□□□□ -0.38
SHMT1-205ENST00000395684 A0A1B0GTL3 188 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 MROH6A6NGR9 719 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 BBIP1A8MTZ0 92 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 SLC7A4O43246 635 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 PAPSS2O95340 614 aaPredicted RBP12.7□□□□□ -0.38
SHMT1-205ENST00000395684 CLIC3O95833 236 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 CD1DP15813 335 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 MYF6P23409 242 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 ETFBP38117 255 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 BRCC3P46736 316 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 NFKB2Q00653 900 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 DSC2Q02487 901 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 MERTKQ12866 999 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms