RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 TTC31Q49AM3 519 aaPredicted RBP25.21■■□□□ 1.63
SHOX2-201ENST00000389589 EFHBQ8N7U6 833 aa25.21■■□□□ 1.63
SHOX2-201ENST00000389589 DDX51Q8N8A6 666 aaKnown RBP eCLIP25.21■■□□□ 1.63
SHOX2-201ENST00000389589 MYO19Q96H55 970 aa25.21■■□□□ 1.63
SHOX2-201ENST00000389589 RILPQ96NA2 401 aa25.21■■□□□ 1.63
SHOX2-201ENST00000389589 TDP1Q9NUW8 608 aa25.21■■□□□ 1.63
SHOX2-201ENST00000389589 PNPOQ9NVS9 261 aa25.21■■□□□ 1.63
SHOX2-201ENST00000389589 LNPEPQ9UIQ6 1025 aa25.21■■□□□ 1.63
SHOX2-201ENST00000389589 CCL26Q9Y258 94 aa25.21■■□□□ 1.63
SHOX2-201ENST00000389589 PCDHB9Q9Y5E1 797 aa25.21■■□□□ 1.63
SHOX2-201ENST00000389589 MYOFQ9NZM1 2061 aa25.21■■□□□ 1.63
SHOX2-201ENST00000389589 PFDN6O15212 129 aa25.21■■□□□ 1.63
SHOX2-201ENST00000389589 STX7O15400 261 aaKnown RBP25.21■■□□□ 1.63
SHOX2-201ENST00000389589 DLX3O60479 287 aa25.21■■□□□ 1.63
SHOX2-201ENST00000389589 HK2P52789 917 aa25.21■■□□□ 1.63
SHOX2-201ENST00000389589 ATG14Q6ZNE5 492 aa25.21■■□□□ 1.63
SHOX2-201ENST00000389589 ALYREFQ86V81 257 aaKnown RBP25.21■■□□□ 1.63
SHOX2-201ENST00000389589 SPATA6LQ8N4H0 392 aa25.21■■□□□ 1.63
SHOX2-201ENST00000389589 TTC30BQ8N4P2 665 aa25.21■■□□□ 1.63
SHOX2-201ENST00000389589 CCDC126Q96EE4 140 aa25.21■■□□□ 1.63
SHOX2-201ENST00000389589 MAGEE1Q9HCI5 957 aa25.21■■□□□ 1.63
SHOX2-201ENST00000389589 SMAD6O43541 496 aaKnown RBP25.2■■□□□ 1.62
SHOX2-201ENST00000389589 CLASP2O75122 1294 aaKnown RBP25.2■■□□□ 1.62
SHOX2-201ENST00000389589 SNUPNO95149 360 aaKnown RBP25.2■■□□□ 1.62
SHOX2-201ENST00000389589 PGLSO95336 258 aa25.2■■□□□ 1.62
SHOX2-201ENST00000389589 CBX6O95503 412 aa25.2■■□□□ 1.62
SHOX2-201ENST00000389589 ATP5F1P24539 256 aaPredicted RBP25.2■■□□□ 1.62
SHOX2-201ENST00000389589 RCN2Q14257 317 aa25.2■■□□□ 1.62
SHOX2-201ENST00000389589 TECRLQ5HYJ1 363 aa25.2■■□□□ 1.62
SHOX2-201ENST00000389589 ZNF549Q6P9A3 640 aa25.2■■□□□ 1.62
SHOX2-201ENST00000389589 PNPLA1Q8N8W4 532 aa25.2■■□□□ 1.62
SHOX2-201ENST00000389589 LMLNQ96KR4 655 aa25.2■■□□□ 1.62
SHOX2-201ENST00000389589 TM6SF2Q9BZW4 377 aa25.2■■□□□ 1.62
SHOX2-201ENST00000389589 NMUR2Q9GZQ4 415 aa25.2■■□□□ 1.62
SHOX2-201ENST00000389589 ILKAPQ9H0C8 392 aaPredicted RBP25.2■■□□□ 1.62
SHOX2-201ENST00000389589 DPP7Q9UHL4 492 aa25.2■■□□□ 1.62
SHOX2-201ENST00000389589 SORCS3Q9UPU3 1222 aa25.2■■□□□ 1.62
SHOX2-201ENST00000389589 H7C0S8 307 aa25.19■■□□□ 1.62
SHOX2-201ENST00000389589 TRAFD1O14545 582 aaPredicted RBP25.19■■□□□ 1.62
SHOX2-201ENST00000389589 IGSF6O95976 241 aa25.19■■□□□ 1.62
SHOX2-201ENST00000389589 SYN1P17600 705 aa25.19■■□□□ 1.62
SHOX2-201ENST00000389589 SUOXP51687 545 aa25.19■■□□□ 1.62
SHOX2-201ENST00000389589 DNAJB13P59910 316 aa25.19■■□□□ 1.62
SHOX2-201ENST00000389589 KCNJ2P63252 427 aa25.19■■□□□ 1.62
SHOX2-201ENST00000389589 BCL2L1Q07817 233 aa25.19■■□□□ 1.62
SHOX2-201ENST00000389589 ZNF557Q8N988 423 aaPredicted RBP25.19■■□□□ 1.62
SHOX2-201ENST00000389589 NSL1Q96IY1 281 aa25.19■■□□□ 1.62
SHOX2-201ENST00000389589 TMEM237Q96Q45 408 aa25.19■■□□□ 1.62
SHOX2-201ENST00000389589 RAB3IPQ96QF0 476 aaPredicted RBP25.19■■□□□ 1.62
SHOX2-201ENST00000389589 CDH19Q9H159 772 aa25.19■■□□□ 1.62
SHOX2-201ENST00000389589 POLR3BQ9NW08 1133 aaPredicted RBP25.19■■□□□ 1.62
SHOX2-201ENST00000389589 INTS6Q9UL03 887 aaKnown RBP25.19■■□□□ 1.62
SHOX2-201ENST00000389589 TRIM33Q9UPN9 1127 aa25.19■■□□□ 1.62
SHOX2-201ENST00000389589 RAP2CQ9Y3L5 183 aa25.19■■□□□ 1.62
SHOX2-201ENST00000389589 GRM6O15303 877 aa25.19■■□□□ 1.62
SHOX2-201ENST00000389589 SOCS5O75159 536 aa25.19■■□□□ 1.62
SHOX2-201ENST00000389589 SERPINA6P08185 405 aa25.19■■□□□ 1.62
SHOX2-201ENST00000389589 EPCAMP16422 314 aa25.19■■□□□ 1.62
SHOX2-201ENST00000389589 IRS1P35568 1242 aa25.19■■□□□ 1.62
SHOX2-201ENST00000389589 CAMK1Q14012 370 aa25.19■■□□□ 1.62
SHOX2-201ENST00000389589 TBCCQ15814 346 aa25.19■■□□□ 1.62
SHOX2-201ENST00000389589 PITRM1Q5JRX3 1037 aa25.19■■□□□ 1.62
SHOX2-201ENST00000389589 PDE12Q6L8Q7 609 aaKnown RBP25.19■■□□□ 1.62
SHOX2-201ENST00000389589 CYB5D1Q6P9G0 228 aa25.19■■□□□ 1.62
SHOX2-201ENST00000389589 AARSD1Q9BTE6 412 aaKnown RBP25.19■■□□□ 1.62
SHOX2-201ENST00000389589 APOBEC2Q9Y235 224 aaKnown RBP25.19■■□□□ 1.62
SHOX2-201ENST00000389589 SLC4A1P02730 911 aa25.18■■□□□ 1.62
SHOX2-201ENST00000389589 SERPINB5P36952 375 aa25.18■■□□□ 1.62
SHOX2-201ENST00000389589 NAGLUP54802 743 aa25.18■■□□□ 1.62
SHOX2-201ENST00000389589 ELF3P78545 371 aaPredicted RBP25.18■■□□□ 1.62
SHOX2-201ENST00000389589 PFKPQ01813 784 aa25.18■■□□□ 1.62
SHOX2-201ENST00000389589 KIF2BQ8N4N8 673 aa25.18■■□□□ 1.62
SHOX2-201ENST00000389589 SMIM14Q96QK8 99 aa25.18■■□□□ 1.62
SHOX2-201ENST00000389589 EBF4Q9BQW3 602 aa25.18■■□□□ 1.62
SHOX2-201ENST00000389589 TBC1D14Q9P2M4 693 aa25.18■■□□□ 1.62
SHOX2-201ENST00000389589 EVLQ9UI08 416 aaPredicted RBP25.18■■□□□ 1.62
SHOX2-201ENST00000389589 ZNF711Q9Y462 761 aa25.18■■□□□ 1.62
SHOX2-201ENST00000389589 NDUFS3O75489 264 aa25.17■■□□□ 1.62
SHOX2-201ENST00000389589 PENKP01210 267 aaPredicted RBP25.17■■□□□ 1.62
SHOX2-201ENST00000389589 SLC5A9Q2M3M2 681 aa25.17■■□□□ 1.62
SHOX2-201ENST00000389589 ZNF781Q8N8C0 355 aa25.17■■□□□ 1.62
SHOX2-201ENST00000389589 PIH1D2Q8WWB5 315 aa25.17■■□□□ 1.62
SHOX2-201ENST00000389589 SLC7A6OSQ96CW6 309 aaPredicted RBP25.17■■□□□ 1.62
SHOX2-201ENST00000389589 C19orf43Q9BQ61 176 aa25.17■■□□□ 1.62
SHOX2-201ENST00000389589 ATP13A3Q9H7F0 1226 aa25.17■■□□□ 1.62
SHOX2-201ENST00000389589 KLC4Q9NSK0 619 aa25.17■■□□□ 1.62
SHOX2-201ENST00000389589 ARL8BQ9NVJ2 186 aa25.17■■□□□ 1.62
SHOX2-201ENST00000389589 ZDHHC7Q9NXF8 308 aa25.17■■□□□ 1.62
SHOX2-201ENST00000389589 FKBPLQ9UIM3 349 aa25.17■■□□□ 1.62
SHOX2-201ENST00000389589 PKP3Q9Y446 797 aa25.17■■□□□ 1.62
SHOX2-201ENST00000389589 ZNF195O14628 629 aa25.17■■□□□ 1.62
SHOX2-201ENST00000389589 HTRA2O43464 458 aaPredicted RBP25.17■■□□□ 1.62
SHOX2-201ENST00000389589 NPHS1O60500 1241 aa25.17■■□□□ 1.62
SHOX2-201ENST00000389589 POU2F2P09086 479 aa25.17■■□□□ 1.62
SHOX2-201ENST00000389589 CALB2P22676 271 aa25.17■■□□□ 1.62
SHOX2-201ENST00000389589 PTPN4P29074 926 aa25.17■■□□□ 1.62
SHOX2-201ENST00000389589 MC4RP32245 332 aa25.17■■□□□ 1.62
SHOX2-201ENST00000389589 TTPAP49638 278 aa25.17■■□□□ 1.62
SHOX2-201ENST00000389589 PRKAA1Q13131 559 aa25.17■■□□□ 1.62
SHOX2-201ENST00000389589 AARS2Q5JTZ9 985 aaKnown RBP25.17■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms