RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 RXRGP48443 463 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 BAK1Q16611 211 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 DCAF6Q58WW2 860 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 GPATCH4Q5T3I0 446 aaKnown RBP2.22□□□□□ -2.05
VPS13A-206ENST00000376646 FAM69AQ5T7M9 428 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 CCDC30Q5VVM6 783 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 C17orf99Q6UX52 265 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 CLEC4GQ6UXB4 293 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 R3HCC1LQ7Z5L2 792 aaKnown RBP2.22□□□□□ -2.05
VPS13A-206ENST00000376646 KIAA2013Q8IYS2 634 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 LSM14AQ8ND56 463 aaKnown RBP2.22□□□□□ -2.05
VPS13A-206ENST00000376646 TMEM170AQ8WVE7 144 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 RFFLQ8WZ73 363 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 ELP4Q96EB1 424 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 ZC3HAV1LQ96H79 300 aaKnown RBP2.22□□□□□ -2.05
VPS13A-206ENST00000376646 FUZQ9BT04 418 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 DDX4Q9NQI0 724 aaKnown RBP2.22□□□□□ -2.05
VPS13A-206ENST00000376646 OLA1Q9NTK5 396 aaKnown RBP2.22□□□□□ -2.05
VPS13A-206ENST00000376646 ZNF224Q9NZL3 707 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 SIX4Q9UIU6 781 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 NAALADL1Q9UQQ1 740 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 A3GALT2U3KPV4 340 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 A0A1W2PPH5 198 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 TNPO2O14787 897 aaKnown RBP2.21□□□□□ -2.06
VPS13A-206ENST00000376646 KLK8O60259 260 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 ZG16O60844 167 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 GUCY1B2O75343 617 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 CRYAAP02489 173 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 G6PDP11413 515 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 CDH15P55291 814 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 SLC20A2Q08357 652 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 GRIK3Q13003 919 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 CAMK1Q14012 370 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 TSTQ16762 297 aaKnown RBP2.21□□□□□ -2.06
VPS13A-206ENST00000376646 HYIQ5T013 277 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 HAUS3Q68CZ6 603 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 GDPD4Q6W3E5 623 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 FOXL2NBQ6ZUU3 175 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 TBC1D26Q86UD7 250 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 ARMC8Q8IUR7 673 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 KLHDC8BQ8IXV7 354 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 ZMIZ2Q8NF64 920 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 BBS10Q8TAM1 723 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 KCNG4Q8TDN1 519 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 FIG4Q92562 907 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 ZNF385AQ96PM9 386 aaKnown RBP2.21□□□□□ -2.06
VPS13A-206ENST00000376646 CD180Q99467 661 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 EYA3Q99504 573 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 MPHOSPH8Q99549 860 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 HEMGNQ9BXL5 484 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 USP44Q9H0E7 712 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 INTS2Q9H0H0 1204 aaKnown RBP2.21□□□□□ -2.06
VPS13A-206ENST00000376646 TMX4Q9H1E5 349 aaPredicted RBP2.21□□□□□ -2.06
VPS13A-206ENST00000376646 UBTD1Q9HAC8 227 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 ZFP57Q9NU63 452 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 TERF2IPQ9NYB0 399 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 SMARCAL1Q9NZC9 954 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 TINAGQ9UJW2 476 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 FBXO9Q9UK97 447 aaPredicted RBP2.21□□□□□ -2.06
VPS13A-206ENST00000376646 CAMK2AQ9UQM7 478 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 GREB1LQ9C091 1923 aaPredicted RBP2.21□□□□□ -2.06
VPS13A-206ENST00000376646 C17orf113A0A1B0GUU1 675 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 BAIAP3O94812 1187 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 SLC2A4P14672 509 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 MARK3P27448 753 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 HNRNPH1P31943 449 aaKnown RBP2.21□□□□□ -2.06
VPS13A-206ENST00000376646 MAN1A1P33908 653 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 EFNA5P52803 228 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 CRIP2P52943 208 aaPredicted RBP2.21□□□□□ -2.06
VPS13A-206ENST00000376646 LINC01547P58512 204 aaPredicted RBP2.21□□□□□ -2.06
VPS13A-206ENST00000376646 TNFAIP1Q13829 316 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 KRT32Q14532 448 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 OASLQ15646 514 aaKnown RBP2.21□□□□□ -2.06
VPS13A-206ENST00000376646 AMZ1Q400G9 498 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 ANKRD54Q6NXT1 300 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 DSG4Q86SJ6 1040 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 EPHX4Q8IUS5 362 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 FOXRED2Q8IWF2 684 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 PLD5Q8N7P1 536 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 TDRD7Q8NHU6 1098 aaKnown RBP2.21□□□□□ -2.06
VPS13A-206ENST00000376646 TMEM19Q96HH6 336 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 MMP28Q9H239 520 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 EBF2Q9HAK2 575 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 VEZTQ9HBM0 779 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 BLOC1S4Q9NUP1 217 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 C1RLQ9NZP8 487 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 ORC3Q9UBD5 711 aaPredicted RBP2.21□□□□□ -2.06
VPS13A-206ENST00000376646 PEMTQ9UBM1 199 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 ITIH6Q6UXX5 1313 aa2.21□□□□□ -2.06
VPS13A-206ENST00000376646 ARHGAP10A1A4S6 786 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 TSPAN4O14817 238 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 PLRG1O43660 514 aaKnown RBP2.2□□□□□ -2.06
VPS13A-206ENST00000376646 SLC22A3O75751 556 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 F9P00740 461 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 URODP06132 367 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 HLA-DOBP13765 273 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 BDNFP23560 247 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 CASP2P42575 452 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 CCR9P51686 369 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 RELQ04864 619 aaPredicted RBP2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms