RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 GK5Q6ZS86 529 aa20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 USP13Q92995 863 aaPredicted RBP20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 CATSPERZQ9NTU4 200 aa20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 CASQ2O14958 399 aaPredicted RBP20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 SUPT7LO94864 414 aa20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 GJB5O95377 273 aa20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 TSPAN8P19075 237 aa20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 RPS24P62847 133 aaKnown RBP20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 NFKB2Q00653 900 aa20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 MS4A2Q01362 244 aa20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 EML3Q32P44 896 aa20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 FBXO22Q8NEZ5 403 aa20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 PPP2R3CQ969Q6 453 aa20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 CDKN2AIPNLQ96HQ2 116 aa20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 PSKH2Q96QS6 385 aa20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 CDK5RAP1Q96SZ6 601 aaKnown RBP20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 SPON2Q9BUD6 331 aa20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 VCX3BQ9H321 246 aa20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 EBF3Q9H4W6 596 aa20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 SEPT3Q9UH03 358 aa20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 CCDC189A1A4V9 331 aa20.83■□□□□ 0.93
CCDC88B-203ENST00000359902 UBDO15205 165 aa20.83■□□□□ 0.93
CCDC88B-203ENST00000359902 HOXB8P17481 243 aaPredicted RBP20.83■□□□□ 0.93
CCDC88B-203ENST00000359902 RGRP47804 291 aa20.83■□□□□ 0.93
CCDC88B-203ENST00000359902 CDH4P55283 916 aa20.83■□□□□ 0.93
CCDC88B-203ENST00000359902 FAM219BQ5XKK7 198 aa20.83■□□□□ 0.93
CCDC88B-203ENST00000359902 OR52E8Q6IFG1 317 aa20.83■□□□□ 0.93
CCDC88B-203ENST00000359902 CYHR1Q6ZMK1 362 aa20.83■□□□□ 0.93
CCDC88B-203ENST00000359902 NPAS4Q8IUM7 802 aa20.83■□□□□ 0.93
CCDC88B-203ENST00000359902 BBS5Q8N3I7 341 aa20.83■□□□□ 0.93
CCDC88B-203ENST00000359902 PXYLP1Q8TE99 480 aa20.83■□□□□ 0.93
CCDC88B-203ENST00000359902 TMEM175Q9BSA9 504 aa20.83■□□□□ 0.93
CCDC88B-203ENST00000359902 PRSS56P0CW18 603 aa20.83■□□□□ 0.92
CCDC88B-203ENST00000359902 OGNP20774 298 aaKnown RBP20.83■□□□□ 0.92
CCDC88B-203ENST00000359902 SLC11A2P49281 568 aa20.83■□□□□ 0.92
CCDC88B-203ENST00000359902 STC1P52823 247 aa20.83■□□□□ 0.92
CCDC88B-203ENST00000359902 HERVK_113P63132 956 aa20.83■□□□□ 0.92
CCDC88B-203ENST00000359902 FLOT2Q14254 428 aa20.83■□□□□ 0.92
CCDC88B-203ENST00000359902 TRIP10Q15642 601 aa20.83■□□□□ 0.92
CCDC88B-203ENST00000359902 CLEC6AQ6EIG7 209 aa20.83■□□□□ 0.92
CCDC88B-203ENST00000359902 RYBPQ8N488 228 aaPredicted RBP20.83■□□□□ 0.92
CCDC88B-203ENST00000359902 RNF148Q8N7C7 305 aa20.83■□□□□ 0.92
CCDC88B-203ENST00000359902 ERVK-6Q9BXR3 956 aa20.83■□□□□ 0.92
CCDC88B-203ENST00000359902 RETREG1Q9H6L5 497 aa20.83■□□□□ 0.92
CCDC88B-203ENST00000359902 POPDC3Q9HBV1 291 aa20.83■□□□□ 0.92
CCDC88B-203ENST00000359902 PSMD13Q9UNM6 376 aa20.83■□□□□ 0.92
CCDC88B-203ENST00000359902 PHF24Q9UPV7 400 aa20.83■□□□□ 0.92
CCDC88B-203ENST00000359902 SPO11Q9Y5K1 396 aa20.83■□□□□ 0.92
CCDC88B-203ENST00000359902 TBKBP1A7MCY6 615 aa20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 KDELR3O43731 214 aa20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 SMIM24O75264 130 aa20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 INHAP05111 366 aa20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 ZNF37AP17032 561 aaPredicted RBP20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 ME2P23368 584 aa20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 XIAPP98170 497 aa20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 NOGQ13253 232 aa20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 BFSP2Q13515 415 aa20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 SQLEQ14534 574 aa20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 TYSND1Q2T9J0 566 aa20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 DENND1CQ8IV53 801 aa20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 SEPT8Q92599 483 aa20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 TMA16Q96EY4 203 aaKnown RBP20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 ZNF512Q96ME7 567 aaPredicted RBP20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 AARSD1Q9BTE6 412 aaKnown RBP20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 MRPL1Q9BYD6 325 aaKnown RBP20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 NACA2Q9H009 215 aa20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 TRPC7Q9HCX4 862 aa20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 MRGBPQ9NV56 204 aa20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 NLE1Q9NVX2 485 aaPredicted RBP20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 UTP6Q9NYH9 597 aaKnown RBP20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 UBA2Q9UBT2 640 aaPredicted RBP20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 PMLP29590 882 aa20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 PTK2BQ14289 1009 aa20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 OR4D1Q15615 310 aa20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 PRICKLE1Q96MT3 831 aaPredicted RBP20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 CINPQ9BW66 212 aaPredicted RBP20.82■□□□□ 0.92
CCDC88B-203ENST00000359902 TET1Q8NFU7 2136 aa20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 ZNF840PA6NDX5 716 aa20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 PSMD12O00232 456 aaPredicted RBP20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 PEX1O43933 1283 aa20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 CRTAMO95727 393 aa20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 KLKB1P03952 638 aa20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 UBTFL6P0CB48 400 aaPredicted RBP20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 RPL17P18621 184 aaKnown RBP20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 SCNN1BP51168 640 aa20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 ZNF140P52738 457 aaPredicted RBP20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 OXCT1P55809 520 aa20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 UGT3A2Q3SY77 523 aa20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 PQLC1Q8N2U9 271 aa20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 EXT2Q93063 718 aa20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 HMX1Q9NP08 348 aaPredicted RBP20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 C6orf203Q9P0P8 240 aaPredicted RBP20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 H3BMM5 538 aa20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 INSIG1O15503 277 aa20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 COCHO43405 550 aa20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 GPC4O75487 556 aa20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 LYNP07948 512 aa20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 MTHFD2P13995 350 aa20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 CR2P20023 1033 aa20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 AQP4P55087 323 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms