RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 WARS2Q9UGM6 360 aaKnown RBP6.81□□□□□ -1.32
VPS39-202ENST00000348544 USP22Q9UPT9 525 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 CTDP1Q9Y5B0 961 aaPredicted RBP6.81□□□□□ -1.32
VPS39-202ENST00000348544 PCDHGA11Q9Y5H2 935 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 MAGED1Q9Y5V3 778 aaPredicted RBP6.81□□□□□ -1.32
VPS39-202ENST00000348544 PTGDR2Q9Y5Y4 395 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 V9GYQ6 96 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 UPK1AO00322 258 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 HCRTO43612 131 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 GMNNO75496 209 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 INMTO95050 263 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 ALBP02768 609 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 IQCF3P0C7M6 154 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 STMN1P16949 149 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 GP2P55259 537 aaKnown RBP6.8□□□□□ -1.32
VPS39-202ENST00000348544 MAPK11Q15759 364 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 SMUG1Q53HV7 270 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 RABL3Q5HYI8 236 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 ATAD3BQ5T9A4 648 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 LAIR2Q6ISS4 152 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 SLCO6A1Q86UG4 719 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 CLIP4Q8N3C7 705 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 MINDY1Q8N5J2 469 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 MUL1Q969V5 352 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 CDHR1Q96JP9 859 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 FAR2Q96K12 515 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 MRPL57Q9BQC6 102 aaKnown RBP6.8□□□□□ -1.32
VPS39-202ENST00000348544 CLSTN3Q9BQT9 956 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 MRPL45Q9BRJ2 306 aaKnown RBP6.8□□□□□ -1.32
VPS39-202ENST00000348544 ADNPQ9H2P0 1102 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 RPAP3Q9H6T3 665 aaPredicted RBP6.8□□□□□ -1.32
VPS39-202ENST00000348544 SETD4Q9NVD3 440 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.8□□□□□ -1.32
VPS39-202ENST00000348544 GMIPQ9P107 970 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 PGAP2Q9UHJ9 254 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 TIMM22Q9Y584 194 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 PCDHA9Q9Y5H5 950 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 LCTP09848 1927 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 COL11A1P12107 1806 aaPredicted RBP6.8□□□□□ -1.32
VPS39-202ENST00000348544 SSC5DA1L4H1 1573 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 MAGEB16A2A368 324 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 BBIP1A8MTZ0 92 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.8□□□□□ -1.32
VPS39-202ENST00000348544 ACKR2O00590 384 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 LDLRP01130 860 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 EIF2S1P05198 315 aaKnown RBP6.8□□□□□ -1.32
VPS39-202ENST00000348544 STAG3L1P0CL83 205 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 FCGR1AP12314 374 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 NFKB1P19838 968 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 DNAJB1P25685 340 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 ARNTP27540 789 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 ATICP31939 592 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 GSK3BP49841 420 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 ATP4BP51164 291 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 ADAM17P78536 824 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 PAFAH1B3Q15102 231 aaKnown RBP6.8□□□□□ -1.32
VPS39-202ENST00000348544 IMPG1Q17R60 797 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 CTU2Q2VPK5 515 aaKnown RBP6.8□□□□□ -1.32
VPS39-202ENST00000348544 LRIT3Q3SXY7 679 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 TECRLQ5HYJ1 363 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 KIAA0408Q6ZU52 694 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 IFNEQ86WN2 208 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 MMAAQ8IVH4 418 aaKnown RBP6.8□□□□□ -1.32
VPS39-202ENST00000348544 ZBTB8OSQ8IWT0 167 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 SCML4Q8N228 414 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 NDNFQ8TB73 568 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 AFG1LQ8WV93 481 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 NDRG1Q92597 394 aaKnown RBP6.8□□□□□ -1.32
VPS39-202ENST00000348544 TMEM125Q96AQ2 219 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 LRRC58Q96CX6 371 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 HDAC11Q96DB2 347 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 NRBF2Q96F24 287 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 UBXN10Q96LJ8 280 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 HOPXQ9BPY8 73 aaPredicted RBP6.8□□□□□ -1.32
VPS39-202ENST00000348544 ING2Q9H160 280 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 TP63Q9H3D4 680 aaPredicted RBP6.8□□□□□ -1.32
VPS39-202ENST00000348544 SNX25Q9H3E2 840 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 FZD8Q9H461 694 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 GSTO2Q9H4Y5 243 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 RMND5AQ9H871 391 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 AKTIPQ9H8T0 292 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 SLC52A3Q9NQ40 469 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 MRGBPQ9NV56 204 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 MTPAPQ9NVV4 582 aaKnown RBP eCLIP6.8□□□□□ -1.32
VPS39-202ENST00000348544 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.8□□□□□ -1.32
VPS39-202ENST00000348544 RCOR3Q9P2K3 495 aaPredicted RBP6.8□□□□□ -1.32
VPS39-202ENST00000348544 ATP11BQ9Y2G3 1177 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 PCDHGA8Q9Y5G5 932 aa6.8□□□□□ -1.32
VPS39-202ENST00000348544 ZBTB42B2RXF5 422 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 FAM72CH0Y354 149 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 INO80B-WBP1J3KQ70 363 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 DCLK1O15075 740 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 MAN1A2O60476 641 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 KPNA6O60684 536 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 IPO13O94829 963 aaKnown RBP6.79□□□□□ -1.32
VPS39-202ENST00000348544 ALPLP05186 524 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 LCP1P13796 627 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 ALDH4A1P30038 563 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 ARSFP54793 590 aa6.79□□□□□ -1.32
VPS39-202ENST00000348544 FPGSQ05932 587 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms