RNA–Protein interactions for RNA: ENST00000344627.10

SGCA-202, Transcript of sarcoglycan alpha, humanhuman

TSL 1 (best) BASIC

Gene SGCA, Length 1,057 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCA-202ENST00000344627 ARHGAP40Q5TG30 622 aa12.45□□□□□ -0.42
SGCA-202ENST00000344627 MARC1Q5VT66 337 aa12.45□□□□□ -0.42
SGCA-202ENST00000344627 FOXR1Q6PIV2 292 aa12.45□□□□□ -0.42
SGCA-202ENST00000344627 LIPIQ6XZB0 460 aa12.45□□□□□ -0.42
SGCA-202ENST00000344627 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.45□□□□□ -0.42
SGCA-202ENST00000344627 NIPA2Q8N8Q9 360 aa12.45□□□□□ -0.42
SGCA-202ENST00000344627 KCTD6Q8NC69 237 aa12.45□□□□□ -0.42
SGCA-202ENST00000344627 PLA2G15Q8NCC3 412 aa12.45□□□□□ -0.42
SGCA-202ENST00000344627 CTNNBL1Q8WYA6 563 aaPredicted RBP12.45□□□□□ -0.42
SGCA-202ENST00000344627 MED8Q96G25 268 aa12.45□□□□□ -0.42
SGCA-202ENST00000344627 ATXN7L3BQ96GX2 97 aa12.45□□□□□ -0.42
SGCA-202ENST00000344627 PRR11Q96HE9 360 aaPredicted RBP12.45□□□□□ -0.42
SGCA-202ENST00000344627 NAF1Q96HR8 494 aaKnown RBP12.45□□□□□ -0.42
SGCA-202ENST00000344627 GFM1Q96RP9 751 aaKnown RBP12.45□□□□□ -0.42
SGCA-202ENST00000344627 NUDCD1Q96RS6 583 aa12.45□□□□□ -0.42
SGCA-202ENST00000344627 XPO4Q9C0E2 1151 aaKnown RBP12.45□□□□□ -0.42
SGCA-202ENST00000344627 SUDS3Q9H7L9 328 aaPredicted RBP12.45□□□□□ -0.42
SGCA-202ENST00000344627 NOD2Q9HC29 1040 aa12.45□□□□□ -0.42
SGCA-202ENST00000344627 NT5MQ9NPB1 228 aa12.45□□□□□ -0.42
SGCA-202ENST00000344627 ZNHIT6Q9NWK9 470 aaKnown RBP12.45□□□□□ -0.42
SGCA-202ENST00000344627 SEPT10Q9P0V9 454 aa12.45□□□□□ -0.42
SGCA-202ENST00000344627 APPL1Q9UKG1 709 aa12.45□□□□□ -0.42
SGCA-202ENST00000344627 ATXN7L1Q9ULK2 861 aaPredicted RBP12.45□□□□□ -0.42
SGCA-202ENST00000344627 GPR34Q9UPC5 381 aa12.45□□□□□ -0.42
SGCA-202ENST00000344627 TTLL3Q9Y4R7 772 aa12.45□□□□□ -0.42
SGCA-202ENST00000344627 UNC13CQ8NB66 2214 aa12.45□□□□□ -0.42
SGCA-202ENST00000344627 B8ZZF3 427 aa12.44□□□□□ -0.42
SGCA-202ENST00000344627 NVLO15381 856 aaKnown RBP12.44□□□□□ -0.42
SGCA-202ENST00000344627 TNFSF15O95150 251 aa12.44□□□□□ -0.42
SGCA-202ENST00000344627 CD48P09326 243 aa12.44□□□□□ -0.42
SGCA-202ENST00000344627 TPM1P09493 284 aa12.44□□□□□ -0.42
SGCA-202ENST00000344627 GLB1P16278 677 aa12.44□□□□□ -0.42
SGCA-202ENST00000344627 CD82P27701 267 aa12.44□□□□□ -0.42
SGCA-202ENST00000344627 VIPR1P32241 457 aa12.44□□□□□ -0.42
SGCA-202ENST00000344627 MMP13P45452 471 aa12.44□□□□□ -0.42
SGCA-202ENST00000344627 KIAA1024LP59773 190 aa12.44□□□□□ -0.42
SGCA-202ENST00000344627 RALGDSQ12967 914 aa12.44□□□□□ -0.42
SGCA-202ENST00000344627 PERM1Q5SV97 790 aa12.44□□□□□ -0.42
SGCA-202ENST00000344627 DPPA4Q7L190 304 aa12.44□□□□□ -0.42
SGCA-202ENST00000344627 TAF8Q7Z7C8 310 aa12.44□□□□□ -0.42
SGCA-202ENST00000344627 PGBD5Q8N414 524 aa12.44□□□□□ -0.42
SGCA-202ENST00000344627 PCDH19Q8TAB3 1148 aa12.44□□□□□ -0.42
SGCA-202ENST00000344627 SPOCK2Q92563 424 aa12.44□□□□□ -0.42
SGCA-202ENST00000344627 TTC9Q92623 222 aa12.44□□□□□ -0.42
SGCA-202ENST00000344627 ECHDC3Q96DC8 303 aa12.44□□□□□ -0.42
SGCA-202ENST00000344627 NSMCE3Q96MG7 304 aa12.44□□□□□ -0.42
SGCA-202ENST00000344627 CCNL2Q96S94 520 aaPredicted RBP12.44□□□□□ -0.42
SGCA-202ENST00000344627 RBM15Q96T37 977 aaKnown RBP eCLIP12.44□□□□□ -0.42
SGCA-202ENST00000344627 AKAP7Q9P0M2 348 aaPredicted RBP12.44□□□□□ -0.42
SGCA-202ENST00000344627 B4GALT6Q9UBX8 382 aa12.44□□□□□ -0.42
SGCA-202ENST00000344627 PHTF1Q9UMS5 762 aa12.44□□□□□ -0.42
SGCA-202ENST00000344627 ARHGEF17Q96PE2 2063 aaPredicted RBP12.43□□□□□ -0.42
SGCA-202ENST00000344627 TMEM202A6NGA9 273 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 TRAFD1O14545 582 aaPredicted RBP12.43□□□□□ -0.42
SGCA-202ENST00000344627 CBFA2T2O43439 604 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 SOCS5O75159 536 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 MAP3K6O95382 1288 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 PRB1P04280 392 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 ITGB2P05107 769 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 H2AFZP0C0S5 128 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 CYP2A6P11509 494 aaPredicted RBP12.43□□□□□ -0.42
SGCA-202ENST00000344627 CTPS1P17812 591 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 ARHGEF7Q14155 803 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 SKOR2Q2VWA4 1001 aaPredicted RBP12.43□□□□□ -0.42
SGCA-202ENST00000344627 ATP13A4Q4VNC1 1196 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 ARMC12Q5T9G4 340 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 OGFOD3Q6PK18 319 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 PCSK4Q6UW60 755 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 NYAP1Q6ZVC0 841 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 H2AFVQ71UI9 128 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 RAB11FIP2Q7L804 512 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 FBXO39Q8N4B4 442 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 KYQ8NBH2 561 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 FAM46DQ8NEK8 389 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 OR56A4Q8NGH8 313 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 OR1E3Q8WZA6 343 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 FUBP1Q96AE4 644 aaKnown RBP12.43□□□□□ -0.42
SGCA-202ENST00000344627 NUS1Q96E22 293 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 PDXPQ96GD0 296 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 WDR26Q9H7D7 661 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 CPNE5Q9HCH3 593 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 CYP4F12Q9HCS2 524 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 MRPL40Q9NQ50 206 aaKnown RBP12.43□□□□□ -0.42
SGCA-202ENST00000344627 WDR70Q9NW82 654 aa12.43□□□□□ -0.42
SGCA-202ENST00000344627 PTPRQQ9UMZ3 2332 aa12.42□□□□□ -0.42
SGCA-202ENST00000344627 D6RAR5 112 aa12.42□□□□□ -0.42
SGCA-202ENST00000344627 HTRA2O43464 458 aaPredicted RBP12.42□□□□□ -0.42
SGCA-202ENST00000344627 NUDT21O43809 227 aaKnown RBP12.42□□□□□ -0.42
SGCA-202ENST00000344627 MFSD11O43934 449 aa12.42□□□□□ -0.42
SGCA-202ENST00000344627 AKR1B10O60218 316 aa12.42□□□□□ -0.42
SGCA-202ENST00000344627 PROSCO94903 275 aa12.42□□□□□ -0.42
SGCA-202ENST00000344627 PEX11BO96011 259 aa12.42□□□□□ -0.42
SGCA-202ENST00000344627 KRT10P13645 584 aa12.42□□□□□ -0.42
SGCA-202ENST00000344627 EPHB1P54762 984 aa12.42□□□□□ -0.42
SGCA-202ENST00000344627 TRAF2Q12933 501 aa12.42□□□□□ -0.42
SGCA-202ENST00000344627 CLN3Q13286 438 aa12.42□□□□□ -0.42
SGCA-202ENST00000344627 MESDQ14696 234 aa12.42□□□□□ -0.42
SGCA-202ENST00000344627 CNGA3Q16281 694 aa12.42□□□□□ -0.42
SGCA-202ENST00000344627 TMEM164Q5U3C3 297 aa12.42□□□□□ -0.42
SGCA-202ENST00000344627 PNCKQ6P2M8 343 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms