RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 RTCAO00442 366 aaKnown RBP8.42□□□□□ -1.06
HMGB1-203ENST00000341423 FBLP22087 321 aaKnown RBP8.42□□□□□ -1.06
HMGB1-203ENST00000341423 TUBB4BP68371 445 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 FANCCQ00597 558 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 ADCK5Q3MIX3 580 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 FIGLAQ6QHK4 219 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 KRT222Q8N1A0 295 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 OR5L2Q8NGL0 311 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 CPT1CQ8TCG5 803 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 MFRPQ9BY79 579 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 PCBD2Q9H0N5 130 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 TIMMDC1Q9NPL8 285 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 KCND1Q9NSA2 647 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 CEP72Q9P209 647 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 EPHA6Q9UF33 1036 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 GLS2Q9UI32 602 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 E7EQ34 232 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 NBNO60934 754 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 COL6A2P12110 1019 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 ENGP17813 658 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 ITGB5P18084 799 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 SLC6A3Q01959 620 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 TRMT61AQ96FX7 289 aaKnown RBP8.42□□□□□ -1.06
HMGB1-203ENST00000341423 LGR4Q9BXB1 951 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 ADPRHL2Q9NX46 363 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 UBP1Q9NZI7 540 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 NFKBIL1Q9UBC1 381 aaPredicted RBP8.42□□□□□ -1.06
HMGB1-203ENST00000341423 ZNF232Q9UNY5 417 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 TTC24A2A3L6 582 aaPredicted RBP8.41□□□□□ -1.06
HMGB1-203ENST00000341423 HIDE1A8MVS5 230 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 TRAFD1O14545 582 aaPredicted RBP8.41□□□□□ -1.06
HMGB1-203ENST00000341423 XPO1O14980 1071 aaKnown RBP8.41□□□□□ -1.06
HMGB1-203ENST00000341423 KMOO15229 486 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 KIAA0513O60268 411 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 FDFT1P37268 417 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 PLA2G5P39877 138 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 SSR2P43308 183 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 C6orf10Q5SRN2 563 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 TANGO2Q6ICL3 276 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 TEX29Q8N6K0 151 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 CAMKVQ8NCB2 501 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 TTLQ8NG68 377 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 FCRL2Q96LA5 508 aaPredicted RBP8.41□□□□□ -1.06
HMGB1-203ENST00000341423 TBCBQ99426 244 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 SEMA3CQ99985 751 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 IL21RQ9HBE5 538 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 ANKMY1Q9P2S6 941 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 PSMD13Q9UNM6 376 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 QRICH2Q9H0J4 1663 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 CREBBPQ92793 2442 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 EVPLLA8MZ36 301 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 B2RBV5 119 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 MED24O75448 989 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 SMNDC1O75940 238 aaKnown RBP eCLIP8.41□□□□□ -1.06
HMGB1-203ENST00000341423 CPNE6O95741 557 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 GLI1P08151 1106 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 SUOXP51687 545 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 GNA12Q03113 381 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 PRKD1Q15139 912 aaPredicted RBP8.41□□□□□ -1.06
HMGB1-203ENST00000341423 CBWD6Q4V339 395 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 LDLRAP1Q5SW96 308 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 TRIM40Q6P9F5 258 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 KIF18BQ86Y91 864 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 NXPE1Q8N323 547 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 ZSCAN4Q8NAM6 433 aaPredicted RBP8.41□□□□□ -1.06
HMGB1-203ENST00000341423 CHDHQ8NE62 594 aaPredicted RBP8.41□□□□□ -1.06
HMGB1-203ENST00000341423 CRB3Q9BUF7 120 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 FRMD8P1Q9BZ68 369 aaPredicted RBP8.41□□□□□ -1.06
HMGB1-203ENST00000341423 TMEM245Q9H330 911 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 PDZD7Q9H5P4 517 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 EPHX3Q9H6B9 360 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 CCDC177Q9NQR7 707 aaPredicted RBP8.41□□□□□ -1.06
HMGB1-203ENST00000341423 ZNF71Q9NQZ8 489 aaPredicted RBP8.41□□□□□ -1.06
HMGB1-203ENST00000341423 RNF112Q9ULX5 631 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 PCDHGA6Q9Y5G7 932 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 TOPAZ1Q8N9V7 1692 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 C9IYK1 514 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 AQP9O43315 295 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 MMP20O60882 483 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 LARGE1O95461 756 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 FHP07954 510 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 EPHA4P54764 986 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 IRF8Q02556 426 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 ECH1Q13011 328 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 ZNF100Q8IYN0 542 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 CFAP206Q8IYR0 622 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 FATE1Q969F0 183 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 SNX27Q96L92 541 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 COL25A1Q9BXS0 654 aaPredicted RBP8.41□□□□□ -1.06
HMGB1-203ENST00000341423 RERGLQ9H628 205 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 TAF6LQ9Y6J9 622 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 A8MVJ9 347 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 CLDN5O00501 218 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 CD2BP2O95400 341 aaKnown RBP8.41□□□□□ -1.06
HMGB1-203ENST00000341423 FAM107AO95990 144 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 PROS1P07225 676 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 SRPRAP08240 638 aaKnown RBP8.41□□□□□ -1.06
HMGB1-203ENST00000341423 EEF1DP29692 281 aaKnown RBP8.41□□□□□ -1.06
HMGB1-203ENST00000341423 HYAL1Q12794 435 aa8.41□□□□□ -1.06
HMGB1-203ENST00000341423 KEAP1Q14145 624 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms