RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 CHID1Q9BWS9 393 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 DGCR6LQ9BY27 220 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 NOL6Q9H6R4 1146 aaKnown RBP10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 GULP1Q9UBP9 304 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 CHKBQ9Y259 395 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 PCDHGB3Q9Y5G1 929 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 IRAK3Q9Y616 596 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 CLDN25C9JDP6 229 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 MAP3K6O95382 1288 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 CPSF4O95639 269 aaKnown RBP10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 ARL4DP49703 201 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 DDX39BQ13838 428 aaKnown RBP10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 SHROOM1Q2M3G4 852 aaPredicted RBP10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 PDCD4Q53EL6 469 aaKnown RBP10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 VSTM1Q6UX27 236 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 KLK14Q9P0G3 267 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 SAMHD1Q9Y3Z3 626 aaKnown RBP10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 LRRC42Q9Y546 428 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 A0A0U1RQJ8 604 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 FGF19O95750 216 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 NFICP08651 508 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 TUBA1BP68363 451 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 LIN54Q6MZP7 749 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 TUBA1AQ71U36 451 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 GSTCDQ8NEC7 633 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 KAT5Q92993 513 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 ALG2Q9H553 416 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 NOL11Q9H8H0 719 aaKnown RBP10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 DMAC2Q9NW81 257 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 A0A0J9YYE9 177 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 SMIM22K7EJ46 135 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 ASGR1P07306 291 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 NR2F6P10588 404 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 MVKQ03426 396 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 THUMPD1Q9NXG2 353 aaKnown RBP10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 BCKDKO14874 412 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 LRCH4O75427 683 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 POLR2JP52435 117 aaKnown RBP10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 EZH1Q92800 747 aaPredicted RBP10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 RFKQ969G6 155 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 TRPS1Q9UHF7 1281 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 STON1Q9Y6Q2 735 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 PLCH1Q4KWH8 1693 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 SIPA1L3O60292 1781 aaPredicted RBP10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 WNT10BO00744 389 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 RBM20Q5T481 1227 aaKnown RBP10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 SLC41A1Q8IVJ1 513 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 LRRC17Q8N6Y2 441 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 FAM84AQ96KN4 292 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 BTN2A3PQ96KV6 586 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 RDH12Q96NR8 316 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 IGSF9Q9P2J2 1179 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 MSCO60682 206 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 HPGDP15428 266 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 GOT1P17174 413 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 HNMTP50135 292 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 PSMD4P55036 377 aaKnown RBP10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 SCN1BQ07699 218 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 C16orf46Q6P387 395 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 CATSPERGQ6ZRH7 1159 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 GPR180Q86V85 440 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 SENP8Q96LD8 212 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 MLPHQ9BV36 600 aaPredicted RBP10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 CCDC59Q9P031 241 aaKnown RBP10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 SLC17A7Q9P2U7 560 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 PRKAG3Q9UGI9 489 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 HMGXB4Q9UGU5 601 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 SNX8Q9Y5X2 465 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 NBNO60934 754 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 WBP4O75554 376 aaKnown RBP10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 AKAP5P24588 427 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 ICAM3P32942 547 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 GOLM1Q8NBJ4 401 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 OSMRQ99650 979 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 DNAAF2Q9NVR5 837 aaKnown RBP10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 PLIN3O60664 434 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 LDOC1O95751 146 aaPredicted RBP10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 CKBP12277 381 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 AKR1A1P14550 325 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 SEZ6Q53EL9 994 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 ZNF57Q68EA5 555 aaPredicted RBP10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 ZFPM1Q8IX07 1006 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 NATD1Q8N6N6 113 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 GLIS3Q8NEA6 775 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 KCNN2Q9H2S1 579 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 MKS1Q9NXB0 559 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 LOC100506127A0A0U1RQW1 187 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 PGM3O95394 542 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 ALDH2P05091 517 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 IL18R1Q13478 541 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 XYLT1Q86Y38 959 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 UBR7Q8N806 425 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 MCFD2Q8NI22 146 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 CSPG4P5Q96PW8 444 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 GNEQ9Y223 722 aaKnown RBP10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 SMIM35A0A1B0GVV1 85 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 DPPA5A6NC42 116 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 ABRQ12979 859 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 FAM182BQ5T319 152 aa10.29□□□□□ -0.76
CCDC88A-202ENST00000336838 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms