RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 TNK2Q07912 1038 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 NR1D2Q14995 579 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 GFOD2Q3B7J2 385 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 GPR158Q5T848 1215 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 THOC7Q6I9Y2 204 aaKnown RBP12.64□□□□□ -0.39
SDC3-201ENST00000336798 CXXC5Q7LFL8 322 aaKnown RBP12.64□□□□□ -0.39
SDC3-201ENST00000336798 PJA1Q8NG27 643 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 NPAS2Q99743 824 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 WRAP53Q9BUR4 548 aaKnown RBP12.64□□□□□ -0.39
SDC3-201ENST00000336798 NKIRAS2Q9NYR9 191 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 LEF1Q9UJU2 399 aaPredicted RBP12.64□□□□□ -0.39
SDC3-201ENST00000336798 PNPLA6Q8IY17 1366 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 C15orf38-AP3S2A0A0A6YYH1 394 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 CHADO15335 359 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 FSBPO95073 299 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 RLN1P04808 185 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 DUSP4Q13115 394 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 ACAP2Q15057 778 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 ARPINQ7Z6K5 226 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 JAZF1Q86VZ6 243 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 HJURPQ8NCD3 748 aaPredicted RBP12.63□□□□□ -0.39
SDC3-201ENST00000336798 VCPIP1Q96JH7 1222 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 GOLGA2P5Q9HBQ8 144 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 ABCB9Q9NP78 766 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 ZNF214Q9UL59 606 aaPredicted RBP12.63□□□□□ -0.39
SDC3-201ENST00000336798 RABL2BQ9UNT1 228 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 TULP2O00295 520 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 PRKAR2AP13861 404 aaKnown RBP12.63□□□□□ -0.39
SDC3-201ENST00000336798 SSR2P43308 183 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 ELF3P78545 371 aaPredicted RBP12.63□□□□□ -0.39
SDC3-201ENST00000336798 SP3Q02447 781 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 GPR107Q5VW38 600 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 ESRP1Q6NXG1 681 aaKnown RBP12.63□□□□□ -0.39
SDC3-201ENST00000336798 FAM83AQ86UY5 434 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 FBXW8Q8N3Y1 598 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 ZNF433Q8N7K0 673 aaPredicted RBP12.63□□□□□ -0.39
SDC3-201ENST00000336798 OR4L1Q8NH43 312 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 SLC9A6Q92581 669 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 KCNS3Q9BQ31 491 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 A0A1W2PQH9 124 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 YDJCA8MPS7 323 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 CSH1P0DML2 217 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 CSH2P0DML3 217 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 SLC6A2P23975 617 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 OR1D2P34982 312 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 RPL22P35268 128 aaKnown RBP12.63□□□□□ -0.39
SDC3-201ENST00000336798 ZNF846Q147U1 533 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 QPRTQ15274 297 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 DLG2Q15700 870 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 MYDGFQ969H8 173 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 UROC1Q96N76 676 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 CLCC1Q96S66 551 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 GAL3ST1Q99999 423 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 AP5Z1O43299 807 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 TLR5O60602 858 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 RNASEH2AO75792 299 aaKnown RBP12.63□□□□□ -0.39
SDC3-201ENST00000336798 NT5EP21589 574 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 BCAP31P51572 246 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 TAPT1Q6NXT6 567 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 BHLHB9Q6PI77 547 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 GPR142Q7Z601 462 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 BAP1Q92560 729 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 PPP3R2Q96LZ3 170 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 PTPN18Q99952 460 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 PRDM12Q9H4Q4 367 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 C9P02748 559 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 UGT1A5P35504 534 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 MASP1P48740 699 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 NAB1Q13506 487 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 PTPN20Q4JDL3 420 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 IRGCQ6NXR0 463 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 LINGO4Q6UY18 593 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 GPR180Q86V85 440 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 NKX2-3Q8TAU0 364 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 RCN3Q96D15 328 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 SPAG4Q9NPE6 437 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 RASSF1Q9NS23 344 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 GIT1Q9Y2X7 761 aa12.63□□□□□ -0.39
SDC3-201ENST00000336798 TRPM1Q7Z4N2 1603 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 EME2A4GXA9 379 aaPredicted RBP12.62□□□□□ -0.39
SDC3-201ENST00000336798 LIASO43766 372 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 STBD1O95210 358 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 ELNP15502 786 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 ZNF143P52747 638 aaPredicted RBP12.62□□□□□ -0.39
SDC3-201ENST00000336798 BNC1Q01954 994 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 DNASE1L2Q92874 299 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 Q96MT0 163 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 KCNK4Q9NYG8 393 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 H7C0S8 307 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 NRP2O60462 931 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 GCATO75600 419 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 FADS2O95864 444 aaKnown RBP12.62□□□□□ -0.39
SDC3-201ENST00000336798 LYNP07948 512 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 CLCN5P51795 746 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 ARHGDIBP52566 201 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 ZNF155Q12901 538 aaPredicted RBP12.62□□□□□ -0.39
SDC3-201ENST00000336798 FAM46CQ5VWP2 391 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 GPR135Q8IZ08 494 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 OR14C36Q8NHC7 312 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 FNIP1Q8TF40 1166 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms