RNA–Protein interactions for RNA: ENST00000332395.6

DDX28-201, Transcript of DEAD-box helicase 28, humanhuman

APPRIS P1 BASIC

Gene DDX28, Length 2,169 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28-201ENST00000332395 DNAJC9Q8WXX5 260 aa17.42■□□□□ 0.38
DDX28-201ENST00000332395 PHF21BQ96EK2 531 aa17.42■□□□□ 0.38
DDX28-201ENST00000332395 CATSPER2Q96P56 530 aa17.42■□□□□ 0.38
DDX28-201ENST00000332395 HSFX1Q9UBD0 423 aa17.42■□□□□ 0.38
DDX28-201ENST00000332395 AGO1Q9UL18 857 aaKnown RBP17.42■□□□□ 0.38
DDX28-201ENST00000332395 YIPF1Q9Y548 306 aa17.42■□□□□ 0.38
DDX28-201ENST00000332395 RGSL1A5PLK6 1076 aa17.42■□□□□ 0.38
DDX28-201ENST00000332395 C2orf78A6NCI8 922 aa17.42■□□□□ 0.38
DDX28-201ENST00000332395 CBX4O00257 560 aa17.42■□□□□ 0.38
DDX28-201ENST00000332395 TSPAN3O60637 253 aa17.42■□□□□ 0.38
DDX28-201ENST00000332395 PARNO95453 639 aaKnown RBP17.42■□□□□ 0.38
DDX28-201ENST00000332395 CRTAMO95727 393 aa17.42■□□□□ 0.38
DDX28-201ENST00000332395 SP100P23497 879 aaPredicted RBP17.42■□□□□ 0.38
DDX28-201ENST00000332395 ALDH1A3P47895 512 aa17.42■□□□□ 0.38
DDX28-201ENST00000332395 TBL3Q12788 808 aaKnown RBP17.42■□□□□ 0.38
DDX28-201ENST00000332395 BIRC2Q13490 618 aa17.42■□□□□ 0.38
DDX28-201ENST00000332395 PPM1LQ5SGD2 360 aa17.42■□□□□ 0.38
DDX28-201ENST00000332395 SETD3Q86TU7 594 aaPredicted RBP17.42■□□□□ 0.38
DDX28-201ENST00000332395 SNX32Q86XE0 403 aa17.42■□□□□ 0.38
DDX28-201ENST00000332395 WBP2Q969T9 261 aa17.42■□□□□ 0.38
DDX28-201ENST00000332395 RMDN1Q96DB5 314 aa17.42■□□□□ 0.38
DDX28-201ENST00000332395 CDKN2AIPNLQ96HQ2 116 aa17.42■□□□□ 0.38
DDX28-201ENST00000332395 ZNF333Q96JL9 665 aa17.42■□□□□ 0.38
DDX28-201ENST00000332395 MAELQ96JY0 434 aaKnown RBP17.42■□□□□ 0.38
DDX28-201ENST00000332395 EML4Q9HC35 981 aaKnown RBP17.42■□□□□ 0.38
DDX28-201ENST00000332395 ANGPTL2Q9UKU9 493 aa17.42■□□□□ 0.38
DDX28-201ENST00000332395 SPO11Q9Y5K1 396 aa17.42■□□□□ 0.38
DDX28-201ENST00000332395 KLHL33A6NCF5 533 aa17.41■□□□□ 0.38
DDX28-201ENST00000332395 SDHDO14521 159 aa17.41■□□□□ 0.38
DDX28-201ENST00000332395 SORBS2O94875 1100 aaKnown RBP17.41■□□□□ 0.38
DDX28-201ENST00000332395 SOD2P04179 222 aa17.41■□□□□ 0.38
DDX28-201ENST00000332395 HOXB8P17481 243 aaPredicted RBP17.41■□□□□ 0.38
DDX28-201ENST00000332395 ADSLP30566 484 aaPredicted RBP17.41■□□□□ 0.38
DDX28-201ENST00000332395 ZNF140P52738 457 aaPredicted RBP17.41■□□□□ 0.38
DDX28-201ENST00000332395 STC1P52823 247 aa17.41■□□□□ 0.38
DDX28-201ENST00000332395 AP2B1P63010 937 aa17.41■□□□□ 0.38
DDX28-201ENST00000332395 TIAL1Q01085 375 aaKnown RBP eCLIP17.41■□□□□ 0.38
DDX28-201ENST00000332395 TPGS2Q68CL5 300 aa17.41■□□□□ 0.38
DDX28-201ENST00000332395 RPS27LQ71UM5 84 aaKnown RBP17.41■□□□□ 0.38
DDX28-201ENST00000332395 C16orf59Q7L2K0 433 aa17.41■□□□□ 0.38
DDX28-201ENST00000332395 ANKRD33Q7Z3H0 272 aa17.41■□□□□ 0.38
DDX28-201ENST00000332395 SDCCAG8Q86SQ7 713 aaPredicted RBP17.41■□□□□ 0.38
DDX28-201ENST00000332395 RP9Q8TA86 221 aaKnown RBP17.41■□□□□ 0.38
DDX28-201ENST00000332395 SCUBE2Q9NQ36 999 aa17.41■□□□□ 0.38
DDX28-201ENST00000332395 NLE1Q9NVX2 485 aaPredicted RBP17.41■□□□□ 0.38
DDX28-201ENST00000332395 TBC1D30Q9Y2I9 924 aa17.41■□□□□ 0.38
DDX28-201ENST00000332395 ARIH1Q9Y4X5 557 aaPredicted RBP17.41■□□□□ 0.38
DDX28-201ENST00000332395 ANPEPP15144 967 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 PMLP29590 882 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 KCNC1P48547 511 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 CYTH1Q15438 398 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 TYSND1Q2T9J0 566 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 SLC30A9Q6PML9 568 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 CUZD1Q86UP6 607 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 PTERQ96BW5 349 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 CCDC124Q96CT7 223 aaKnown RBP17.4■□□□□ 0.38
DDX28-201ENST00000332395 TRMT2BQ96GJ1 504 aaKnown RBP17.4■□□□□ 0.38
DDX28-201ENST00000332395 MARK4Q96L34 752 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 TSC22D3Q99576 134 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 KLF16Q9BXK1 252 aaPredicted RBP17.4■□□□□ 0.38
DDX28-201ENST00000332395 TDRD1Q9BXT4 1180 aaKnown RBP17.4■□□□□ 0.38
DDX28-201ENST00000332395 MUC3BQ9H195 1237 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 OGDHLQ9ULD0 1010 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 FIS1Q9Y3D6 152 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 AIM2O14862 343 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 FKBP6O75344 327 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 PRLP01236 227 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 PDHA1P08559 390 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 PRSS56P0CW18 603 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 CD1DP15813 335 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 VEGFBP49765 207 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 NUDT2P50583 147 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 SUOXP51687 545 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 GALNT1Q10472 559 aaPredicted RBP17.4■□□□□ 0.38
DDX28-201ENST00000332395 CYLC2Q14093 348 aaPredicted RBP17.4■□□□□ 0.38
DDX28-201ENST00000332395 RBBP5Q15291 538 aaKnown RBP17.4■□□□□ 0.38
DDX28-201ENST00000332395 ZRSR2Q15696 482 aaKnown RBP17.4■□□□□ 0.38
DDX28-201ENST00000332395 SPOUT1Q5T280 376 aaKnown RBP17.4■□□□□ 0.38
DDX28-201ENST00000332395 RNF219Q5W0B1 726 aaPredicted RBP17.4■□□□□ 0.38
DDX28-201ENST00000332395 CXorf57Q6NSI4 855 aaKnown RBP17.4■□□□□ 0.38
DDX28-201ENST00000332395 GLT6D1Q7Z4J2 308 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 FBXW8Q8N3Y1 598 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 FAR2Q96K12 515 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 ZBTB26Q9HCK0 441 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 TNFRSF12AQ9NP84 129 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 ASB3Q9Y575 518 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 COL4A6Q14031 1691 aa17.4■□□□□ 0.38
DDX28-201ENST00000332395 ZNF37AP17032 561 aaPredicted RBP17.39■□□□□ 0.37
DDX28-201ENST00000332395 IMPDH1P20839 514 aa17.39■□□□□ 0.37
DDX28-201ENST00000332395 DSG1Q02413 1049 aa17.39■□□□□ 0.37
DDX28-201ENST00000332395 KLC1Q07866 573 aa17.39■□□□□ 0.37
DDX28-201ENST00000332395 IKBKEQ14164 716 aa17.39■□□□□ 0.37
DDX28-201ENST00000332395 VEPH1Q14D04 833 aa17.39■□□□□ 0.37
DDX28-201ENST00000332395 TAF1AQ15573 450 aaPredicted RBP17.39■□□□□ 0.37
DDX28-201ENST00000332395 HPS6Q86YV9 775 aa17.39■□□□□ 0.37
DDX28-201ENST00000332395 AFAP1L2Q8N4X5 818 aa17.39■□□□□ 0.37
DDX28-201ENST00000332395 PPFIBP2Q8ND30 876 aa17.39■□□□□ 0.37
DDX28-201ENST00000332395 MDGA1Q8NFP4 955 aa17.39■□□□□ 0.37
DDX28-201ENST00000332395 OR4K2Q8NGD2 314 aa17.39■□□□□ 0.37
DDX28-201ENST00000332395 CEP70Q8NHQ1 597 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms