RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 COMMD9Q9P000 198 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 MRPS7Q9Y2R9 242 aaKnown RBP11.53□□□□□ -0.56
VPS39-201ENST00000318006 ABCC6O95255 1503 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 FOXO6A8MYZ6 492 aa11.52□□□□□ -0.56
VPS39-201ENST00000318006 RGS10O43665 173 aa11.52□□□□□ -0.56
VPS39-201ENST00000318006 ZNF7P17097 686 aaPredicted RBP11.52□□□□□ -0.56
VPS39-201ENST00000318006 STARP49675 285 aa11.52□□□□□ -0.56
VPS39-201ENST00000318006 NADK2Q4G0N4 442 aa11.52□□□□□ -0.56
VPS39-201ENST00000318006 DUSP28Q4G0W2 176 aa11.52□□□□□ -0.56
VPS39-201ENST00000318006 P2RY8Q86VZ1 359 aa11.52□□□□□ -0.56
VPS39-201ENST00000318006 PGBD3Q8N328 593 aa11.52□□□□□ -0.56
VPS39-201ENST00000318006 HM13Q8TCT9 377 aa11.52□□□□□ -0.56
VPS39-201ENST00000318006 C10orf82Q8WW14 230 aa11.52□□□□□ -0.56
VPS39-201ENST00000318006 UROC1Q96N76 676 aa11.52□□□□□ -0.56
VPS39-201ENST00000318006 LHX5Q9H2C1 402 aa11.52□□□□□ -0.56
VPS39-201ENST00000318006 OPTCQ9UBM4 332 aa11.52□□□□□ -0.56
VPS39-201ENST00000318006 LRRC42Q9Y546 428 aa11.52□□□□□ -0.56
VPS39-201ENST00000318006 ATP6AP2A0A1C7CYW4 349 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 IFRD1O00458 451 aaPredicted RBP11.52□□□□□ -0.57
VPS39-201ENST00000318006 ATP6AP2O75787 350 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 HNRNPLP14866 589 aaKnown RBP eCLIP11.52□□□□□ -0.57
VPS39-201ENST00000318006 ADSLP30566 484 aaPredicted RBP11.52□□□□□ -0.57
VPS39-201ENST00000318006 FKBP1BP68106 108 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 TRIM32Q13049 653 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 SLC9A5Q14940 896 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 ZC3H12AQ5D1E8 599 aaKnown RBP11.52□□□□□ -0.57
VPS39-201ENST00000318006 KCTD8Q6ZWB6 473 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 C12orf50Q8NA57 414 aaPredicted RBP11.52□□□□□ -0.57
VPS39-201ENST00000318006 ANKRD49Q8WVL7 239 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 PPP3R2Q96LZ3 170 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 TRMOQ9BU70 441 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 NKX1-2Q9UD57 310 aaPredicted RBP11.52□□□□□ -0.57
VPS39-201ENST00000318006 PFDN2Q9UHV9 154 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 CRYL1Q9Y2S2 319 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 SPEF1Q9Y4P9 236 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 COL1A2P08123 1366 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 TSPAN3O60637 253 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 NOS1APO75052 506 aaPredicted RBP11.52□□□□□ -0.57
VPS39-201ENST00000318006 THRBP10828 461 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 GPR15P49685 360 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 RPL26P61254 145 aaKnown RBP11.52□□□□□ -0.57
VPS39-201ENST00000318006 RALGDSQ12967 914 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 BTG3Q14201 252 aaPredicted RBP11.52□□□□□ -0.57
VPS39-201ENST00000318006 SPPL2CQ8IUH8 684 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 CENPNQ96H22 339 aaPredicted RBP11.52□□□□□ -0.57
VPS39-201ENST00000318006 A0A1W2PRG6 482 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 AZIN1O14977 448 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 LRIG2O94898 1065 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 STAU1O95793 577 aaKnown RBP11.52□□□□□ -0.57
VPS39-201ENST00000318006 C4BPAP04003 597 aaKnown RBP11.52□□□□□ -0.57
VPS39-201ENST00000318006 ITGA2P17301 1181 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 MPSTP25325 297 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 RCVRNP35243 200 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 POLD2P49005 469 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 CCDC157Q569K6 752 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 ZCCHC8Q6NZY4 707 aaKnown RBP11.52□□□□□ -0.57
VPS39-201ENST00000318006 ERAP2Q6P179 960 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 FAM180AQ6UWF9 173 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 GATAD2AQ86YP4 633 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 OR8H1Q8NGG4 311 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 NXNL1Q96CM4 212 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 SLC47A1Q96FL8 570 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 LENG8Q96PV6 779 aaPredicted RBP11.52□□□□□ -0.57
VPS39-201ENST00000318006 ADI1Q9BV57 179 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 RHOBTB2Q9BYZ6 727 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 UNC93B1Q9H1C4 597 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 PRDM12Q9H4Q4 367 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 AHSPQ9NZD4 102 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 GNPTGQ9UJJ9 305 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 TMED5Q9Y3A6 229 aa11.52□□□□□ -0.57
VPS39-201ENST00000318006 COL14A1Q05707 1796 aaKnown RBP11.52□□□□□ -0.57
VPS39-201ENST00000318006 S100A6P06703 90 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 COX7A2P14406 83 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 ERCC2P18074 760 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 PAX3P23760 479 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 NOS3P29474 1203 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 ICAM3P32942 547 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 RPL9P32969 192 aaKnown RBP11.51□□□□□ -0.57
VPS39-201ENST00000318006 HPCAL1P37235 193 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 IST1P53990 364 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 IL2P60568 153 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 CCNIQ14094 377 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 PPP1R26Q5T8A7 1209 aaPredicted RBP11.51□□□□□ -0.57
VPS39-201ENST00000318006 LIN54Q6MZP7 749 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 C6orf89Q6UWU4 347 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 RASSF6Q6ZTQ3 369 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 FRMD7Q6ZUT3 714 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 CMC1Q7Z7K0 106 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 NKAPQ8N5F7 415 aaKnown RBP11.51□□□□□ -0.57
VPS39-201ENST00000318006 LRRC20Q8TCA0 184 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 CIPCQ9C0C6 399 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 ST3GAL5Q9UNP4 418 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 DERAQ9Y315 318 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 PCDHGA10Q9Y5H3 936 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 A0A0J9YYE9 177 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 H3BMM5 538 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 PLK4O00444 970 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 CREB1P16220 341 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 CYP2A7P20853 494 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 FOXN2P32314 431 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms