RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 OR1D5P58170 312 aa14.79□□□□□ -0.04
CCDC88B-201ENST00000301897 SQSTM1Q13501 440 aa14.79□□□□□ -0.04
CCDC88B-201ENST00000301897 TMCO4Q5TGY1 634 aa14.79□□□□□ -0.04
CCDC88B-201ENST00000301897 PPP1R2P3Q6NXS1 205 aa14.79□□□□□ -0.04
CCDC88B-201ENST00000301897 DCUN1D2Q6PH85 259 aa14.79□□□□□ -0.04
CCDC88B-201ENST00000301897 NYAP1Q6ZVC0 841 aa14.79□□□□□ -0.04
CCDC88B-201ENST00000301897 IL22RA1Q8N6P7 574 aa14.79□□□□□ -0.04
CCDC88B-201ENST00000301897 OR4D9Q8NGE8 314 aa14.79□□□□□ -0.04
CCDC88B-201ENST00000301897 HTR3CQ8WXA8 447 aa14.79□□□□□ -0.04
CCDC88B-201ENST00000301897 NUS1Q96E22 293 aa14.79□□□□□ -0.04
CCDC88B-201ENST00000301897 PCDHB18PQ96TA0 734 aa14.79□□□□□ -0.04
CCDC88B-201ENST00000301897 DDA1Q9BW61 102 aa14.79□□□□□ -0.04
CCDC88B-201ENST00000301897 LGR4Q9BXB1 951 aa14.79□□□□□ -0.04
CCDC88B-201ENST00000301897 SLC12A9Q9BXP2 914 aa14.79□□□□□ -0.04
CCDC88B-201ENST00000301897 SP110Q9HB58 689 aa14.79□□□□□ -0.04
CCDC88B-201ENST00000301897 RDH14Q9HBH5 336 aa14.79□□□□□ -0.04
CCDC88B-201ENST00000301897 SEPT11Q9NVA2 429 aaKnown RBP14.79□□□□□ -0.04
CCDC88B-201ENST00000301897 TAB2Q9NYJ8 693 aa14.79□□□□□ -0.04
CCDC88B-201ENST00000301897 TAAR2Q9P1P5 351 aa14.79□□□□□ -0.04
CCDC88B-201ENST00000301897 USP9YO00507 2555 aaPredicted RBP14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 IGHV5-10-1A0A0J9YXX1 117 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 TCRBV5S1A1TA0A578 114 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 AGRPO00253 132 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 EEF2KO00418 725 aaKnown RBP14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 TRAFD1O14545 582 aaPredicted RBP14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 DAPK3O43293 454 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 NTRK1P04629 796 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 FGF1P05230 155 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 CCL4P13236 92 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 WT1P19544 449 aaPredicted RBP14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 TEAD1P28347 426 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 CSTF2P33240 577 aaKnown RBP eCLIP14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 RGRP47804 291 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 SCNN1BP51168 640 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 ZNF135P52742 658 aaPredicted RBP14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 LIMK2P53671 638 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 MAZP56270 477 aaKnown RBP14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 RAB15P59190 212 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 CYP4F2P78329 520 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 SRSF1Q07955 248 aaKnown RBP eCLIP14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 IL10RBQ08334 325 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 CLCA4Q14CN2 919 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 COLEC12Q5KU26 742 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 CCL4L1Q8NHW4 92 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 ZNF564Q8TBZ8 553 aaPredicted RBP14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 NKD1Q969G9 470 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 CELF6Q96J87 481 aaKnown RBP14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 CCDC74BQ96LY2 380 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 COQ10AQ96MF6 247 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 NUDT22Q9BRQ3 303 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 TEX101Q9BY14 249 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 SLC39A8Q9C0K1 460 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 VPS16Q9H269 839 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 SPATS2LQ9NUQ6 558 aaKnown RBP14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 AP4E1Q9UPM8 1137 aa14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 RP1L1Q8IWN7 2480 aaPredicted RBP14.78□□□□□ -0.04
CCDC88B-201ENST00000301897 ZNF891A8MT65 544 aaPredicted RBP14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 SOCS5O75159 536 aa14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 ECEL1O95672 775 aa14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 CCDC172P0C7W6 258 aa14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 FGF3P11487 239 aaPredicted RBP14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 GM2AP17900 193 aa14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 CD1CP29017 333 aa14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 HSPA9P38646 679 aaKnown RBP14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 RPL7AP62424 266 aaKnown RBP14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 GPLD1P80108 840 aa14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 TLE1Q04724 770 aa14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 KCNAB2Q13303 367 aa14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 PPP1R15BQ5SWA1 713 aa14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 HEATR4Q86WZ0 1026 aa14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 NRROSQ86YC3 692 aa14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 SFTPA2Q8IWL1 248 aa14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 LZTR1Q8N653 840 aa14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 NEK11Q8NG66 645 aa14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 ENOX1Q8TC92 643 aaKnown RBP14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 ZNF599Q96NL3 588 aa14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 TEFMQ96QE5 360 aaKnown RBP14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 PSKH2Q96QS6 385 aa14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 EFHD1Q9BUP0 239 aa14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 FRMD8Q9BZ67 464 aaPredicted RBP14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 B4GALT6Q9UBX8 382 aa14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 SPTAN1Q13813 2472 aaKnown RBP14.77□□□□□ -0.05
CCDC88B-201ENST00000301897 B4E171 279 aa14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 PSMD11O00231 422 aa14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 DFFAO00273 331 aa14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 HTRA2O43464 458 aaPredicted RBP14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 CEACAM5P06731 702 aa14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 IVLP07476 585 aa14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 CYP2A6P11509 494 aaPredicted RBP14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 VIPR1P32241 457 aa14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 MAN1A1P33908 653 aa14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 TSPAN7P41732 249 aa14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 CCR10P46092 362 aa14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 GNPDA1P46926 289 aa14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 KLK7P49862 253 aa14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 POLE2P56282 527 aa14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 KRT31Q15323 416 aa14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 DCAF12Q5T6F0 453 aa14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 ERMARDQ5T6L9 678 aa14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 RFX8Q6ZV50 586 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms