RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 YAP1P46937 504 aaKnown RBP15.39■□□□□ 0.05
SHH-201ENST00000297261 CTXN3Q4LDR2 81 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 ARHGAP17Q68EM7 881 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 FSTL4Q6MZW2 842 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 POTEHQ6S545 545 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 ZBTB8BQ8NAP8 495 aaPredicted RBP15.39■□□□□ 0.05
SHH-201ENST00000297261 NFKBIZQ9BYH8 718 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 TXLNGYQ9BZA5 131 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 DUSP12Q9UNI6 340 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 IGKV6-21A0A0C4DH24 114 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 C2orf81A6NN90 581 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 T-ENOLP0DO92 83 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 CYP4F2P78329 520 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 CYP4F3Q08477 520 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 LSAMPQ13449 338 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 GCNT7Q6ZNI0 430 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 MS4A4AQ96JQ5 239 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 HSFY1Q96LI6 401 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 RHOJQ9H4E5 214 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 SEPT4O43236 478 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 SEC22BO75396 215 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 IMPDH2P12268 514 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 ADAM17P78536 824 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 RHBDF2Q6PJF5 856 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 CCDC149Q6ZUS6 474 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 TMEM86AQ8N2M4 240 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 PGLYRP2Q96PD5 576 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 TAS2R13Q9NYV9 303 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 LEF1Q9UJU2 399 aaPredicted RBP15.39■□□□□ 0.05
SHH-201ENST00000297261 GMPPBQ9Y5P6 360 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 CDK5RAP2Q96SN8 1893 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 A0A087X1B8 175 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 CCNKO75909 580 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 F7P08709 466 aaPredicted RBP15.38■□□□□ 0.05
SHH-201ENST00000297261 ALOX5P09917 674 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 GM2AP17900 193 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 AOC1P19801 751 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 RPS9P46781 194 aaKnown RBP15.38■□□□□ 0.05
SHH-201ENST00000297261 GRM3Q14832 879 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 SPDYE7PQ495Y7 208 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 COLEC11Q9BWP8 271 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 TKTL2Q9H0I9 626 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 DPEP3Q9H4B8 488 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 DNAJA2O60884 412 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 RECQLP46063 649 aaPredicted RBP15.38■□□□□ 0.05
SHH-201ENST00000297261 CCNG1P51959 295 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 CLEC6AQ6EIG7 209 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 PMF1Q6P1K2 205 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 MAMDC4Q6UXC1 1216 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 DEFB128Q7Z7B8 93 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 TBC1D21Q8IYX1 336 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 CD101Q93033 1021 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 BHMTQ93088 406 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 TEKT5Q96M29 485 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 ZNF512Q96ME7 567 aaPredicted RBP15.38■□□□□ 0.05
SHH-201ENST00000297261 VAT1Q99536 393 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 EPB41L4BQ9H329 900 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 OR12D3Q9UGF7 316 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 SIX4Q9UIU6 781 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 PADI3Q9ULW8 664 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 NRXN2Q9P2S2 1712 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 A0A1W2PPW3 197 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 TBKBP1A7MCY6 615 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 PRKG2Q13237 762 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 SH3PXD2AQ5TCZ1 1133 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 TYW3Q6IPR3 259 aaKnown RBP15.38■□□□□ 0.05
SHH-201ENST00000297261 CDH24Q86UP0 819 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 OR56A4Q8NGH8 313 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 RDH11Q8TC12 318 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 WNT8BQ93098 351 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 PPM1MQ96MI6 270 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 RNF39Q9H2S5 420 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 VPS9D1Q9Y2B5 631 aa15.38■□□□□ 0.05
SHH-201ENST00000297261 PPEF2O14830 753 aa15.37■□□□□ 0.05
SHH-201ENST00000297261 FOXD2O60548 495 aaPredicted RBP15.37■□□□□ 0.05
SHH-201ENST00000297261 METTL18O95568 372 aa15.37■□□□□ 0.05
SHH-201ENST00000297261 IL1R2P27930 398 aa15.37■□□□□ 0.05
SHH-201ENST00000297261 ARHGEF7Q14155 803 aa15.37■□□□□ 0.05
SHH-201ENST00000297261 TMEM214Q6NUQ4 689 aaKnown RBP15.37■□□□□ 0.05
SHH-201ENST00000297261 C15orf39Q6ZRI6 1047 aa15.37■□□□□ 0.05
SHH-201ENST00000297261 CLYBLQ8N0X4 340 aa15.37■□□□□ 0.05
SHH-201ENST00000297261 MPP5Q8N3R9 675 aa15.37■□□□□ 0.05
SHH-201ENST00000297261 CDYL2Q8N8U2 506 aa15.37■□□□□ 0.05
SHH-201ENST00000297261 CSPG4P5Q96PW8 444 aa15.37■□□□□ 0.05
SHH-201ENST00000297261 CITED4Q96RK1 184 aa15.37■□□□□ 0.05
SHH-201ENST00000297261 E7ENX8 843 aa15.37■□□□□ 0.05
SHH-201ENST00000297261 SLC2A3P11169 496 aa15.37■□□□□ 0.05
SHH-201ENST00000297261 TPSB2P20231 275 aa15.37■□□□□ 0.05
SHH-201ENST00000297261 BRCC3P46736 316 aa15.37■□□□□ 0.05
SHH-201ENST00000297261 SEMA5AQ13591 1074 aa15.37■□□□□ 0.05
SHH-201ENST00000297261 TPSAB1Q15661 275 aa15.37■□□□□ 0.05
SHH-201ENST00000297261 KLHL17Q6TDP4 642 aa15.37■□□□□ 0.05
SHH-201ENST00000297261 RALGPS2Q86X27 583 aaPredicted RBP15.37■□□□□ 0.05
SHH-201ENST00000297261 CANT1Q8WVQ1 401 aa15.37■□□□□ 0.05
SHH-201ENST00000297261 PPP1R14BQ96C90 147 aa15.37■□□□□ 0.05
SHH-201ENST00000297261 CRLS1Q9UJA2 301 aa15.37■□□□□ 0.05
SHH-201ENST00000297261 F8W810 466 aa15.37■□□□□ 0.05
SHH-201ENST00000297261 EDN1P05305 212 aa15.37■□□□□ 0.05
SHH-201ENST00000297261 PRDX6P30041 224 aa15.37■□□□□ 0.05
SHH-201ENST00000297261 ALDH7A1P49419 539 aaKnown RBP15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 128.2 ms