RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 CDKL1Q00532 357 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 AAGABQ6PD74 315 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 SLC24A5Q71RS6 500 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 ARPINQ7Z6K5 226 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 MYO1HQ8N1T3 1032 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 ARRDC2Q8TBH0 407 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 DNAJB14Q8TBM8 379 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 NSMCE3Q96MG7 304 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 NOL11Q9H8H0 719 aaKnown RBP16.64■□□□□ 0.25
VPS54-201ENST00000272322 PSMD13Q9UNM6 376 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 AP4B1Q9Y6B7 739 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 FBP2O00757 339 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 BAIAP3O94812 1187 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 GRIA3P42263 894 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 RAB27AP51159 221 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 TAS2R42Q7RTR8 314 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 ATP6V0D2Q8N8Y2 350 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 GRIN3AQ8TCU5 1115 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 SCLYQ96I15 445 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 TM6SF2Q9BZW4 377 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 CCDC68Q9H2F9 335 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 AKTIPQ9H8T0 292 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 SLC4A7Q9Y6M7 1214 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 A0A1B0GVG6 124 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 SAC3D1A6NKF1 404 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 LIN7AO14910 233 aaPredicted RBP16.64■□□□□ 0.25
VPS54-201ENST00000272322 PIP5K1BO14986 540 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 SPATA31D3P0C874 917 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 RHOQP17081 205 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 PIK3CGP48736 1102 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 SGSHP51688 502 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 DIO3P55073 304 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 DSC3Q14574 896 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 TAF12Q16514 161 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 NADSYN1Q6IA69 706 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 SPATA31D4Q6ZUB0 917 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 IKZF3Q9UKT9 509 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 Q9Y3F1 56 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 DNAH14Q0VDD8 3507 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 ZSWIM8A7E2V4 1837 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 TRPC5OSA6NMA1 111 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 SRP72O76094 671 aaKnown RBP16.63■□□□□ 0.25
VPS54-201ENST00000272322 CTPS1P17812 591 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 GSTT1P30711 240 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 SLC6A4P31645 630 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 CYP2C18P33260 490 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 GGT5P36269 586 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 ACLYP53396 1101 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 ZRANB3Q5FWF4 1079 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 REP15Q6BDI9 236 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 DEFB128Q7Z7B8 93 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 ST13P4Q8IZP2 240 aaPredicted RBP16.63■□□□□ 0.25
VPS54-201ENST00000272322 TSPAN18Q96SJ8 248 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 SPATS2LQ9NUQ6 558 aaKnown RBP16.63■□□□□ 0.25
VPS54-201ENST00000272322 PCDHB8Q9UN66 801 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 NUP214P35658 2090 aaPredicted RBP16.63■□□□□ 0.25
VPS54-201ENST00000272322 TMEM88BA6NKF7 163 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 SNAP91O60641 907 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 AOC2O75106 756 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 NIPSNAP2O75323 286 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 DNAJB2P25686 324 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 PRKAA2P54646 552 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 CCL23P55773 120 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 NFE2Q16621 373 aaPredicted RBP16.63■□□□□ 0.25
VPS54-201ENST00000272322 PTPRNQ16849 979 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 RARS2Q5T160 578 aaKnown RBP16.63■□□□□ 0.25
VPS54-201ENST00000272322 PGAM4Q8N0Y7 254 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 CALML6Q8TD86 181 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 JADE3Q92613 823 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 SLC30A3Q99726 388 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 POLR1EQ9GZS1 481 aaKnown RBP16.63■□□□□ 0.25
VPS54-201ENST00000272322 FBXO44Q9H4M3 255 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 VTI1BQ9UEU0 232 aa16.63■□□□□ 0.25
VPS54-201ENST00000272322 A0A087X1B8 175 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 AKAP10O43572 662 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 CACNG3O60359 315 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 KATNA1O75449 491 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 GKP32189 559 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 EIF4EBP2Q13542 120 aaPredicted RBP16.62■□□□□ 0.25
VPS54-201ENST00000272322 C18orf21Q32NC0 220 aaPredicted RBP16.62■□□□□ 0.25
VPS54-201ENST00000272322 COLGALT2Q8IYK4 626 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 RDH11Q8TC12 318 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 CCDC97Q96F63 343 aaPredicted RBP16.62■□□□□ 0.25
VPS54-201ENST00000272322 BTN2A3PQ96KV6 586 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 PRKD2Q9BZL6 878 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.62■□□□□ 0.25
VPS54-201ENST00000272322 DNAJC15Q9Y5T4 150 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 XIRP2A4UGR9 3374 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 MOXD2PA6NHM9 499 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 PDLIM1O00151 329 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 AP3B1O00203 1094 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 BTN3A1O00481 513 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 H2AFYO75367 372 aaKnown RBP16.62■□□□□ 0.25
VPS54-201ENST00000272322 CRTAMO95727 393 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 ALDOCP09972 364 aaKnown RBP16.62■□□□□ 0.25
VPS54-201ENST00000272322 ATXN1LP0C7T5 689 aaKnown RBP16.62■□□□□ 0.25
VPS54-201ENST00000272322 STX1BP61266 288 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 UNC50Q53HI1 259 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 ARTNQ5T4W7 220 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 CNTN4Q8IWV2 1026 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms