RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 CLPTM1LQ96KA5 538 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 BTN2A3PQ96KV6 586 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 VPS35Q96QK1 796 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 MRPL17Q9NRX2 175 aaKnown RBP10.77□□□□□ -0.69
CD44-201ENST00000263398 IKZF3Q9UKT9 509 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 A0A088AWK7 358 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 DHX15O43143 795 aaKnown RBP10.77□□□□□ -0.69
CD44-201ENST00000263398 MSCO60682 206 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 FTH1P02794 183 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 PKMP14618 531 aaKnown RBP10.77□□□□□ -0.69
CD44-201ENST00000263398 CREB1P16220 341 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 ZNF10P21506 573 aaPredicted RBP10.77□□□□□ -0.69
CD44-201ENST00000263398 PPIBP23284 216 aaKnown RBP10.77□□□□□ -0.69
CD44-201ENST00000263398 IL12RB1P42701 662 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 SMIM11AP58511 58 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 YBEYP58557 167 aaPredicted RBP10.77□□□□□ -0.69
CD44-201ENST00000263398 COX10Q12887 443 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 PPM1JQ5JR12 505 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 SDHAF4Q5VUM1 108 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 GPR107Q5VW38 600 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 VSTM1Q6UX27 236 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 ZDHHC24Q6UX98 284 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 GK5Q6ZS86 529 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 SPATA19Q7Z5L4 167 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 NXNL1Q96CM4 212 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 MFSD3Q96ES6 412 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 ITCHQ96J02 903 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 Q96MT0 163 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 PLEKHG4BQ96PX9 1271 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 GOLGA2P5Q9HBQ8 144 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 APOBEC3GQ9HC16 384 aaKnown RBP10.77□□□□□ -0.69
CD44-201ENST00000263398 CRNNQ9UBG3 495 aaPredicted RBP10.77□□□□□ -0.69
CD44-201ENST00000263398 DMTF1Q9Y222 760 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 ANGPT4Q9Y264 503 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 FADS3Q9Y5Q0 445 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 TBL1XO60907 577 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 AMHP03971 560 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 DLG2Q15700 870 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 CYP20A1Q6UW02 462 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 CCDC149Q6ZUS6 474 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 CPSF7Q8N684 471 aaKnown RBP10.77□□□□□ -0.69
CD44-201ENST00000263398 PHF10Q8WUB8 498 aaKnown RBP10.77□□□□□ -0.69
CD44-201ENST00000263398 SUSD6Q92537 303 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 ZHX1-C8orf76Q96EF9 292 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 RHOBTB2Q9BYZ6 727 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 GBA3Q9H227 469 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 AGO3Q9H9G7 860 aaKnown RBP10.77□□□□□ -0.69
CD44-201ENST00000263398 KLHL1Q9NR64 748 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 SLC27A5Q9Y2P5 690 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 SESN1Q9Y6P5 492 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 TCHHQ07283 1943 aa10.77□□□□□ -0.69
CD44-201ENST00000263398 ACADMP11310 421 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 L1CAMP32004 1257 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 SEMA5AQ13591 1074 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 IKBKEQ14164 716 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 GRM3Q14832 879 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 DOK6Q6PKX4 331 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 LEMD2Q8NC56 503 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 ZFP28Q8NHY6 868 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 GRIN3AQ8TCU5 1115 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 ZNF558Q96NG5 402 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 LENG8Q96PV6 779 aaPredicted RBP10.76□□□□□ -0.69
CD44-201ENST00000263398 GATA5Q9BWX5 397 aaPredicted RBP10.76□□□□□ -0.69
CD44-201ENST00000263398 EPB41L1Q9H4G0 881 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 PDZD7Q9H5P4 517 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 ZDHHC18Q9NUE0 388 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 CLN6Q9NWW5 311 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 ATP6V1HQ9UI12 483 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 TSC22D2O75157 780 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 TIPRLO75663 272 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 TCEA3O75764 348 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 CCNCP24863 283 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 SKP1P63208 163 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 OTOP3Q7RTS5 596 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 BANPQ8N9N5 519 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 CLEC4DQ8WXI8 215 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 PIK3R5Q8WYR1 880 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 SPATA5L1Q9BVQ7 753 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 C1QTNF7Q9BXJ2 289 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 NOL11Q9H8H0 719 aaKnown RBP10.76□□□□□ -0.69
CD44-201ENST00000263398 PCDH12Q9NPG4 1184 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 TMEM39AQ9NV64 488 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 ZNF232Q9UNY5 417 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 CACNA1FO60840 1977 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 TRAV19A0A0A6YYK7 116 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 SCAMP3O14828 347 aaKnown RBP10.76□□□□□ -0.69
CD44-201ENST00000263398 CLDN11O75508 207 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 RPP40O75818 363 aaKnown RBP10.76□□□□□ -0.69
CD44-201ENST00000263398 ETS2P15036 469 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 TNNI3P19429 210 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 PRDX6P30041 224 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 PRKAG1P54619 331 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 FSTL1Q12841 308 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 NR1D2Q14995 579 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 FNDC3BQ53EP0 1204 aaKnown RBP10.76□□□□□ -0.69
CD44-201ENST00000263398 XKR6Q5GH73 641 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 TREML2Q5T2D2 321 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 BHLHB9Q6PI77 547 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 PAGE2Q7Z2X7 111 aa10.76□□□□□ -0.69
CD44-201ENST00000263398 RD3Q7Z3Z2 195 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms