RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 LPAR1Q92633 364 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 HBEGFQ99075 208 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 R3HDMLQ9H3Y0 253 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 MRPL40Q9NQ50 206 aaKnown RBP14.39□□□□□ -0.11
SDC1-201ENST00000254351 SETD4Q9NVD3 440 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 SYNPO2Q9UMS6 1093 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 A8MT66 165 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 CLDN25C9JDP6 229 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 FARP2O94887 1054 aaPredicted RBP14.39□□□□□ -0.11
SDC1-201ENST00000254351 PRKACGP22612 351 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 CD151P48509 253 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 KCNC1P48547 511 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 TRAP1Q12931 704 aaKnown RBP14.39□□□□□ -0.11
SDC1-201ENST00000254351 NAB1Q13506 487 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 GJC2Q5T442 439 aaPredicted RBP14.39□□□□□ -0.11
SDC1-201ENST00000254351 PIM3Q86V86 326 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 ERO1BQ86YB8 467 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 KIAA2013Q8IYS2 634 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 ADGRG5Q8IZF4 528 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 ZCCHC7Q8N3Z6 543 aaKnown RBP14.39□□□□□ -0.11
SDC1-201ENST00000254351 PCYOX1LQ8NBM8 494 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 OR13F1Q8NGS4 319 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 NDNFQ8TB73 568 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 NSMCE3Q96MG7 304 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.39□□□□□ -0.11
SDC1-201ENST00000254351 TUBA8Q9NY65 449 aaPredicted RBP14.39□□□□□ -0.11
SDC1-201ENST00000254351 TSR3Q9UJK0 312 aaKnown RBP14.39□□□□□ -0.11
SDC1-201ENST00000254351 TMEM98Q9Y2Y6 226 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 H0YJX3 145 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 FZD9O00144 591 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 APOA4P06727 396 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 HSPA1AP0DMV8 641 aaKnown RBP14.38□□□□□ -0.11
SDC1-201ENST00000254351 HSPA1BP0DMV9 641 aaKnown RBP14.38□□□□□ -0.11
SDC1-201ENST00000254351 NFYCQ13952 458 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 ACAP2Q15057 778 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 SLC26A9Q7LBE3 791 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 DNERQ8NFT8 737 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 NSUN5Q96P11 429 aaKnown RBP14.38□□□□□ -0.11
SDC1-201ENST00000254351 KCTD14Q9BQ13 255 aaPredicted RBP14.38□□□□□ -0.11
SDC1-201ENST00000254351 EIF2AQ9BY44 585 aaKnown RBP14.38□□□□□ -0.11
SDC1-201ENST00000254351 SIK2Q9H0K1 926 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 PIGVQ9NUD9 493 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.38□□□□□ -0.11
SDC1-201ENST00000254351 MTRRQ9UBK8 725 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 BAG5Q9UL15 447 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 CRYL1Q9Y2S2 319 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 TIMM22Q9Y584 194 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 WNT10BO00744 389 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 HTR1BP28222 390 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 FRG1Q14331 258 aaKnown RBP14.38□□□□□ -0.11
SDC1-201ENST00000254351 ATP6AP1Q15904 470 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 PHKG1Q16816 387 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 CCNYL2Q5T2Q4 361 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 IER5Q5VY09 327 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 ANKRD49Q8WVL7 239 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 EDEM1Q92611 657 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 FEM1CQ96JP0 617 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 GPR78Q96P69 363 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 CHID1Q9BWS9 393 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 ALOXE3Q9BYJ1 711 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 ZNF214Q9UL59 606 aaPredicted RBP14.38□□□□□ -0.11
SDC1-201ENST00000254351 FZD10Q9ULW2 581 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 INVSQ9Y283 1065 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 NDUFAF1Q9Y375 327 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 USP3Q9Y6I4 520 aa14.38□□□□□ -0.11
SDC1-201ENST00000254351 ZFC3H1O60293 1989 aaKnown RBP14.38□□□□□ -0.11
SDC1-201ENST00000254351 TTC24A2A3L6 582 aaPredicted RBP14.37□□□□□ -0.11
SDC1-201ENST00000254351 NCF1BA6NI72 391 aaPredicted RBP14.37□□□□□ -0.11
SDC1-201ENST00000254351 NCF1CA8MVU1 366 aaPredicted RBP14.37□□□□□ -0.11
SDC1-201ENST00000254351 TARM1B6A8C7 271 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 XPNPEP2O43895 674 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 RASAL1O95294 804 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 NADKO95544 446 aaPredicted RBP14.37□□□□□ -0.11
SDC1-201ENST00000254351 LDLRP01130 860 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 TXNP10599 105 aaKnown RBP14.37□□□□□ -0.11
SDC1-201ENST00000254351 NCF1P14598 390 aaPredicted RBP14.37□□□□□ -0.11
SDC1-201ENST00000254351 AXLP30530 894 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 TARBP2Q15633 366 aaKnown RBP14.37□□□□□ -0.11
SDC1-201ENST00000254351 PIWIL4Q7Z3Z4 852 aaKnown RBP14.37□□□□□ -0.11
SDC1-201ENST00000254351 SFRP1Q8N474 314 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 TEX37Q96LM6 180 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 OLFM1Q99784 485 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 NIFKQ9BYG3 293 aaKnown RBP14.37□□□□□ -0.11
SDC1-201ENST00000254351 ACAD9Q9H845 621 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 KLK14Q9P0G3 267 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 PTBP2Q9UKA9 531 aaKnown RBP14.37□□□□□ -0.11
SDC1-201ENST00000254351 M0R3G1 203 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 PGK2P07205 417 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 MBL2P11226 248 aaPredicted RBP14.37□□□□□ -0.11
SDC1-201ENST00000254351 HGFP14210 728 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 SLC6A2P23975 617 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 TKTP29401 623 aaKnown RBP14.37□□□□□ -0.11
SDC1-201ENST00000254351 TPI1P60174 286 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 OXA1LQ15070 435 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 MAPRE1Q15691 268 aaKnown RBP14.37□□□□□ -0.11
SDC1-201ENST00000254351 UGT3A2Q3SY77 523 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 TMTC4Q5T4D3 741 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 GPR158Q5T848 1215 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 BROXQ5VW32 411 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 XAF1Q6GPH4 301 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms