RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 CDH13P55290 713 aa13.58□□□□□ -0.24
SF3A1-201ENST00000215793 SP3Q02447 781 aa13.58□□□□□ -0.24
SF3A1-201ENST00000215793 TRAP1Q12931 704 aaKnown RBP13.58□□□□□ -0.24
SF3A1-201ENST00000215793 GALNT18Q6P9A2 607 aa13.58□□□□□ -0.24
SF3A1-201ENST00000215793 SCAIQ8N9R8 606 aa13.58□□□□□ -0.24
SF3A1-201ENST00000215793 CSPG4P5Q96PW8 444 aa13.58□□□□□ -0.24
SF3A1-201ENST00000215793 MRPL45Q9BRJ2 306 aaKnown RBP13.58□□□□□ -0.24
SF3A1-201ENST00000215793 PCDHB1Q9Y5F3 818 aa13.58□□□□□ -0.24
SF3A1-201ENST00000215793 RIC1Q4ADV7 1423 aa13.58□□□□□ -0.24
SF3A1-201ENST00000215793 ZNF37AP17032 561 aaPredicted RBP13.58□□□□□ -0.24
SF3A1-201ENST00000215793 FKBP1BP68106 108 aa13.58□□□□□ -0.24
SF3A1-201ENST00000215793 PEX6Q13608 980 aa13.58□□□□□ -0.24
SF3A1-201ENST00000215793 PARP15Q460N3 678 aa13.58□□□□□ -0.24
SF3A1-201ENST00000215793 DUSP28Q4G0W2 176 aa13.58□□□□□ -0.24
SF3A1-201ENST00000215793 SPATA19Q7Z5L4 167 aa13.58□□□□□ -0.24
SF3A1-201ENST00000215793 DENND6AQ8IWF6 608 aa13.58□□□□□ -0.24
SF3A1-201ENST00000215793 CYP4X1Q8N118 509 aa13.58□□□□□ -0.24
SF3A1-201ENST00000215793 TCAIMQ8N3R3 496 aa13.58□□□□□ -0.24
SF3A1-201ENST00000215793 PHC3Q8NDX5 983 aa13.58□□□□□ -0.24
SF3A1-201ENST00000215793 NKD2Q969F2 451 aaPredicted RBP13.58□□□□□ -0.24
SF3A1-201ENST00000215793 MAF1Q9H063 256 aa13.58□□□□□ -0.24
SF3A1-201ENST00000215793 UBAP1Q9NZ09 502 aa13.58□□□□□ -0.24
SF3A1-201ENST00000215793 NR2E3Q9Y5X4 410 aa13.58□□□□□ -0.24
SF3A1-201ENST00000215793 SCAMP3O14828 347 aaKnown RBP13.57□□□□□ -0.24
SF3A1-201ENST00000215793 TNFRSF21O75509 655 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 PIAS1O75925 651 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 CTPS1P17812 591 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 PAX7P23759 505 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 RPL4P36578 427 aaKnown RBP13.57□□□□□ -0.24
SF3A1-201ENST00000215793 TIGD2Q4W5G0 525 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 ASZ1Q8WWH4 475 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 KIFC1Q9BW19 673 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 LMAN2LQ9H0V9 348 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 CLK4Q9HAZ1 481 aaKnown RBP13.57□□□□□ -0.24
SF3A1-201ENST00000215793 PLLPQ9Y342 182 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 REXO2Q9Y3B8 237 aaKnown RBP13.57□□□□□ -0.24
SF3A1-201ENST00000215793 GPSM3Q9Y4H4 160 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 ISM1B1AKI9 464 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 PGM3O95394 542 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 HNF4AP41235 474 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 CXCR3P49682 368 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 FUT2Q10981 343 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 RFTN2Q52LD8 501 aaPredicted RBP13.57□□□□□ -0.24
SF3A1-201ENST00000215793 KIAA1324Q6UXG2 1013 aaKnown RBP13.57□□□□□ -0.24
SF3A1-201ENST00000215793 C4orf32Q8N8J7 132 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 KLHL23Q8NBE8 558 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 OR2T12Q8NG77 320 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 S100ZQ8WXG8 99 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 MCRS1Q96EZ8 462 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 PCDHB18PQ96TA0 734 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 CRISPLD1Q9H336 500 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 TMPRSS4Q9NRS4 437 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 MRPS33Q9Y291 106 aaKnown RBP13.57□□□□□ -0.24
SF3A1-201ENST00000215793 WTIPA6NIX2 430 aaPredicted RBP13.57□□□□□ -0.24
SF3A1-201ENST00000215793 DHX15O43143 795 aaKnown RBP13.57□□□□□ -0.24
SF3A1-201ENST00000215793 LYPLA1O75608 230 aaPredicted RBP13.57□□□□□ -0.24
SF3A1-201ENST00000215793 CTNNB1P35222 781 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 CDK9P50750 372 aaKnown RBP13.57□□□□□ -0.24
SF3A1-201ENST00000215793 YBEYP58557 167 aaPredicted RBP13.57□□□□□ -0.24
SF3A1-201ENST00000215793 SRP54P61011 504 aaKnown RBP13.57□□□□□ -0.24
SF3A1-201ENST00000215793 LGALS3BPQ08380 585 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 TARBP2Q15633 366 aaKnown RBP13.57□□□□□ -0.24
SF3A1-201ENST00000215793 CHSY3Q70JA7 882 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 AMIGO2Q86SJ2 522 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 ALYREFQ86V81 257 aaKnown RBP13.57□□□□□ -0.24
SF3A1-201ENST00000215793 CHPFQ8IZ52 775 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 SPATA6LQ8N4H0 392 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 OR8D1Q8WZ84 308 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 AP3S1Q92572 193 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 PPCDCQ96CD2 204 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 RSPH9Q9H1X1 276 aaPredicted RBP13.57□□□□□ -0.24
SF3A1-201ENST00000215793 NXF3Q9H4D5 531 aaKnown RBP13.57□□□□□ -0.24
SF3A1-201ENST00000215793 AP4B1Q9Y6B7 739 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 AK5Q9Y6K8 562 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 CILPO75339 1184 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 ELFN1P0C7U0 828 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 PKMP14618 531 aaKnown RBP13.57□□□□□ -0.24
SF3A1-201ENST00000215793 SPIBQ01892 262 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 USP4Q13107 963 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 INTS6LQ5JSJ4 861 aaKnown RBP13.57□□□□□ -0.24
SF3A1-201ENST00000215793 METTL21CQ5VZV1 264 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 IRF2BP1Q8IU81 584 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 TTPALQ9BTX7 342 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 ZFYVE1Q9HBF4 777 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 PNPOQ9NVS9 261 aa13.57□□□□□ -0.24
SF3A1-201ENST00000215793 SAMD4AQ9UPU9 718 aaKnown RBP13.57□□□□□ -0.24
SF3A1-201ENST00000215793 MAP2P11137 1827 aaKnown RBP13.56□□□□□ -0.24
SF3A1-201ENST00000215793 UBE2QL1A1L167 161 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 PRR5-ARHGAP8B1AHC4 643 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 HAT1O14929 419 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 CCNYL3P0C7X3 344 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 KELP23276 732 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 ARHGAP8P85298 464 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 ECM1Q16610 540 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 ISLR2Q6UXK2 745 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 FAM151BQ6UXP7 276 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 CERS6Q6ZMG9 384 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 TNFRSF25Q93038 417 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 MYO19Q96H55 970 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 CPXM1Q96SM3 734 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms