RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 KLK8O60259 260 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 SKAP2O75563 359 aaPredicted RBP0.48□□□□□ -2.33
VPS35-212ENST00000640313 METTL18O95568 372 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 ADAP00813 363 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 KRT18P05783 430 aaKnown RBP0.48□□□□□ -2.33
VPS35-212ENST00000640313 ITGA2BP08514 1039 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 HNRNPA1P09651 372 aaKnown RBP eCLIP0.48□□□□□ -2.33
VPS35-212ENST00000640313 IFIT2P09913 472 aaKnown RBP0.48□□□□□ -2.33
VPS35-212ENST00000640313 NBPF7P0C2Y1 421 aaPredicted RBP0.48□□□□□ -2.33
VPS35-212ENST00000640313 TBC1D3HP0C7X1 549 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 PRSS56P0CW18 603 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 ERVK-10P10266 1014 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 FCGR2AP12318 317 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 CKMT1AP12532 417 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 CDH1P12830 882 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 CHN1P15882 459 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 HOXB9P17482 250 aaPredicted RBP0.48□□□□□ -2.33
VPS35-212ENST00000640313 EDN2P20800 178 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 CD72P21854 359 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 TTKP33981 857 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 RYKP34925 604 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 ADD2P35612 726 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 DCTP40126 519 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 GRK6P43250 576 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 PTPN9P43378 593 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 CENPAP49450 140 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 MCM2P49736 904 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 CYP2J2P51589 502 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 CLCNKBP51801 687 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 RHBDL3P58872 404 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 HNRNPKP61978 463 aaKnown RBP eCLIP0.48□□□□□ -2.33
VPS35-212ENST00000640313 ICA1Q05084 483 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 RNASELQ05823 741 aaKnown RBP0.48□□□□□ -2.33
VPS35-212ENST00000640313 BTKQ06187 659 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 PDCLQ13371 301 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 BLMHQ13867 455 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 MORC3Q14149 939 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 IL13RA2Q14627 380 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 TMEM187Q14656 261 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 POSTNQ15063 836 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 AP5B1Q2VPB7 878 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 TBRG1Q3YBR2 411 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 C5orf22Q49AR2 442 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 FBXO43Q4G163 708 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 DCAF6Q58WW2 860 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 ZNF667Q5HYK9 610 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 SH2D4BQ5SQS7 431 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 FAM83BQ5T0W9 1011 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 ATPAF1Q5TC12 328 aaPredicted RBP0.48□□□□□ -2.33
VPS35-212ENST00000640313 FAM171A1Q5VUB5 890 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 SFMBT2Q5VUG0 894 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 TBC1D3GQ6DHY5 549 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 TBC1D3CQ6IPX1 549 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 FAM53AQ6NSI3 398 aaPredicted RBP0.48□□□□□ -2.33
VPS35-212ENST00000640313 AADACL2Q6P093 401 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 CCDC174Q6PII3 467 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 TRIM65Q6PJ69 517 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 C17orf99Q6UX52 265 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 CCDC129Q6ZRS4 1044 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 BBS12Q6ZW61 710 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 Q7L0L9 218 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 RRAGAQ7L523 313 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 SYT13Q7L8C5 426 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 MOGAT3Q86VF5 341 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 WDR5BQ86VZ2 330 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 FOXRED2Q8IWF2 684 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 TBC1D3Q8IZP1 549 aaPredicted RBP0.48□□□□□ -2.33
VPS35-212ENST00000640313 VPS52Q8N1B4 723 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 SAMD3Q8N6K7 520 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 SCAIQ8N9R8 606 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 ATG16L2Q8NAA4 619 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 LSM14AQ8ND56 463 aaKnown RBP0.48□□□□□ -2.33
VPS35-212ENST00000640313 MCPH1Q8NEM0 835 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 LINS1Q8NG48 757 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 OR6Y1Q8NGX8 325 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 ZPLD1Q8TCW7 415 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 CSGALNACT1Q8TDX6 532 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 WDR60Q8WVS4 1066 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 TRAPPC12Q8WVT3 735 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 FAR1Q8WVX9 515 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 ZNRF4Q8WWF5 429 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 HERVK_113Q902F9 699 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 TRIB2Q92519 343 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 CPT1BQ92523 772 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 SDCCAG3Q96C92 435 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 RNFT2Q96EX2 444 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 MASTLQ96GX5 879 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 TMEM19Q96HH6 336 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 ABHD8Q96I13 439 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 LINC00167Q96N53 147 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 TEFMQ96QE5 360 aaKnown RBP0.48□□□□□ -2.33
VPS35-212ENST00000640313 TWNKQ96RR1 684 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 PIGSQ96S52 555 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 IWS1Q96ST2 819 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 LBHD1Q9BQE6 289 aaPredicted RBP0.48□□□□□ -2.33
VPS35-212ENST00000640313 PHF7Q9BWX1 381 aaPredicted RBP0.48□□□□□ -2.33
VPS35-212ENST00000640313 NPFFR1Q9GZQ6 430 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 CTDSP1Q9GZU7 261 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 CLPBQ9H078 707 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 ELAC1Q9H777 363 aaKnown RBP0.48□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms