RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 BABAM1Q9NWV8 329 aa4.11□□□□□ -1.75
CD44-239ENST00000639002 SNED1Q8TER0 1413 aa4.11□□□□□ -1.75
CD44-239ENST00000639002 C16orf97H3BN30 126 aa4.1□□□□□ -1.75
CD44-239ENST00000639002 SLC22A3O75751 556 aa4.1□□□□□ -1.75
CD44-239ENST00000639002 URODP06132 367 aa4.1□□□□□ -1.75
CD44-239ENST00000639002 G6PDP11413 515 aa4.1□□□□□ -1.75
CD44-239ENST00000639002 CDH1P12830 882 aa4.1□□□□□ -1.75
CD44-239ENST00000639002 RGS19P49795 217 aa4.1□□□□□ -1.75
CD44-239ENST00000639002 ITGADQ13349 1161 aa4.1□□□□□ -1.75
CD44-239ENST00000639002 ACCSLQ4AC99 568 aa4.1□□□□□ -1.75
CD44-239ENST00000639002 PLA2G4FQ68DD2 849 aa4.1□□□□□ -1.75
CD44-239ENST00000639002 FAM122CQ6P4D5 195 aa4.1□□□□□ -1.75
CD44-239ENST00000639002 CCNI2Q6ZMN8 369 aaPredicted RBP4.1□□□□□ -1.75
CD44-239ENST00000639002 BBS12Q6ZW61 710 aa4.1□□□□□ -1.75
CD44-239ENST00000639002 ADGRG6Q86SQ4 1221 aa4.1□□□□□ -1.75
CD44-239ENST00000639002 GPAT4Q86UL3 456 aa4.1□□□□□ -1.75
CD44-239ENST00000639002 EPHX4Q8IUS5 362 aa4.1□□□□□ -1.75
CD44-239ENST00000639002 LBHD1Q9BQE6 289 aaPredicted RBP4.1□□□□□ -1.75
CD44-239ENST00000639002 TTYH1Q9H313 450 aaPredicted RBP4.1□□□□□ -1.75
CD44-239ENST00000639002 PCDH9Q9HC56 1237 aa4.1□□□□□ -1.75
CD44-239ENST00000639002 SCRT2Q9NQ03 307 aa4.1□□□□□ -1.75
CD44-239ENST00000639002 CNGB3Q9NQW8 809 aa4.1□□□□□ -1.75
CD44-239ENST00000639002 KIAA1456Q9P272 454 aa4.1□□□□□ -1.75
CD44-239ENST00000639002 RALYQ9UKM9 306 aaKnown RBP4.1□□□□□ -1.75
CD44-239ENST00000639002 CARD8Q9Y2G2 431 aa4.1□□□□□ -1.75
CD44-239ENST00000639002 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.1□□□□□ -1.75
CD44-239ENST00000639002 STON1Q9Y6Q2 735 aa4.1□□□□□ -1.75
CD44-239ENST00000639002 A0A1W2PS18 150 aa4.09□□□□□ -1.75
CD44-239ENST00000639002 ASPDHA6ND91 283 aa4.09□□□□□ -1.75
CD44-239ENST00000639002 TEX22C9J3V5 150 aa4.09□□□□□ -1.75
CD44-239ENST00000639002 IRAK2O43187 625 aa4.09□□□□□ -1.75
CD44-239ENST00000639002 FGF17O60258 216 aa4.09□□□□□ -1.75
CD44-239ENST00000639002 ZG16O60844 167 aa4.09□□□□□ -1.75
CD44-239ENST00000639002 MTA2O94776 668 aa4.09□□□□□ -1.75
CD44-239ENST00000639002 HEXAP06865 529 aa4.09□□□□□ -1.75
CD44-239ENST00000639002 MMP2P08253 660 aa4.09□□□□□ -1.75
CD44-239ENST00000639002 CYC1P08574 325 aa4.09□□□□□ -1.75
CD44-239ENST00000639002 DDIT3P35638 169 aa4.09□□□□□ -1.75
CD44-239ENST00000639002 PAPOLAP51003 745 aaKnown RBP4.09□□□□□ -1.75
CD44-239ENST00000639002 C2orf68Q2NKX9 166 aa4.09□□□□□ -1.75
CD44-239ENST00000639002 EIF2S3LQ2VIR3 472 aaKnown RBP4.09□□□□□ -1.75
CD44-239ENST00000639002 HIST2H2BDQ6DRA6 164 aa4.09□□□□□ -1.75
CD44-239ENST00000639002 FBXO46Q6PJ61 603 aaPredicted RBP4.09□□□□□ -1.75
CD44-239ENST00000639002 WDR63Q8IWG1 891 aa4.09□□□□□ -1.75
CD44-239ENST00000639002 DHX40Q8IX18 779 aaKnown RBP4.09□□□□□ -1.75
CD44-239ENST00000639002 SLC35F3Q8IY50 421 aa4.09□□□□□ -1.75
CD44-239ENST00000639002 ZNF34Q8IZ26 560 aa4.09□□□□□ -1.75
CD44-239ENST00000639002 SCCPDHQ8NBX0 429 aa4.09□□□□□ -1.75
CD44-239ENST00000639002 BBS10Q8TAM1 723 aa4.09□□□□□ -1.75
CD44-239ENST00000639002 DUSP19Q8WTR2 217 aa4.09□□□□□ -1.75
CD44-239ENST00000639002 TAF15Q92804 592 aaKnown RBP eCLIP4.09□□□□□ -1.75
CD44-239ENST00000639002 ABTB1Q969K4 478 aaPredicted RBP4.09□□□□□ -1.75
CD44-239ENST00000639002 WBP2Q969T9 261 aa4.09□□□□□ -1.75
CD44-239ENST00000639002 KXD1Q9BQD3 176 aa4.09□□□□□ -1.75
CD44-239ENST00000639002 HEMGNQ9BXL5 484 aa4.09□□□□□ -1.75
CD44-239ENST00000639002 ZNF334Q9HCZ1 680 aaPredicted RBP4.09□□□□□ -1.75
CD44-239ENST00000639002 IL1RAPL1Q9NZN1 696 aa4.09□□□□□ -1.75
CD44-239ENST00000639002 PCDHGB3Q9Y5G1 929 aa4.09□□□□□ -1.75
CD44-239ENST00000639002 TSPAN3O60637 253 aa4.08□□□□□ -1.76
CD44-239ENST00000639002 NBNO60934 754 aa4.08□□□□□ -1.76
CD44-239ENST00000639002 ATP1A1P05023 1023 aaKnown RBP4.08□□□□□ -1.76
CD44-239ENST00000639002 CETPP11597 493 aa4.08□□□□□ -1.76
CD44-239ENST00000639002 CD58P19256 250 aa4.08□□□□□ -1.76
CD44-239ENST00000639002 CD53P19397 219 aa4.08□□□□□ -1.76
CD44-239ENST00000639002 S1PR1P21453 382 aa4.08□□□□□ -1.76
CD44-239ENST00000639002 SHMT1P34896 483 aa4.08□□□□□ -1.76
CD44-239ENST00000639002 CCR5P51681 352 aa4.08□□□□□ -1.76
CD44-239ENST00000639002 TDGQ13569 410 aa4.08□□□□□ -1.76
CD44-239ENST00000639002 SLC12A1Q13621 1099 aa4.08□□□□□ -1.76
CD44-239ENST00000639002 TAF11Q15544 211 aa4.08□□□□□ -1.76
CD44-239ENST00000639002 MAP3K21Q5TCX8 1036 aa4.08□□□□□ -1.76
CD44-239ENST00000639002 SLC26A9Q7LBE3 791 aa4.08□□□□□ -1.76
CD44-239ENST00000639002 TADA2BQ86TJ2 420 aa4.08□□□□□ -1.76
CD44-239ENST00000639002 TMTC1Q8IUR5 882 aa4.08□□□□□ -1.76
CD44-239ENST00000639002 FBXL8Q96CD0 374 aa4.08□□□□□ -1.76
CD44-239ENST00000639002 ZNF570Q96NI8 536 aa4.08□□□□□ -1.76
CD44-239ENST00000639002 C1QTNF5Q9BXJ0 243 aa4.08□□□□□ -1.76
CD44-239ENST00000639002 MAGEE1Q9HCI5 957 aa4.08□□□□□ -1.76
CD44-239ENST00000639002 MCM9Q9NXL9 1143 aa4.08□□□□□ -1.76
CD44-239ENST00000639002 HSPB7Q9UBY9 170 aa4.08□□□□□ -1.76
CD44-239ENST00000639002 RCOR1Q9UKL0 485 aa4.08□□□□□ -1.76
CD44-239ENST00000639002 LSM4Q9Y4Z0 139 aaKnown RBP4.08□□□□□ -1.76
CD44-239ENST00000639002 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.07□□□□□ -1.76
CD44-239ENST00000639002 GOLGA6L10A0A0M3HER8 536 aa4.07□□□□□ -1.76
CD44-239ENST00000639002 KRTAP9-6A8MVA2 160 aa4.07□□□□□ -1.76
CD44-239ENST00000639002 LDLRP01130 860 aa4.07□□□□□ -1.76
CD44-239ENST00000639002 APOHP02749 345 aaPredicted RBP4.07□□□□□ -1.76
CD44-239ENST00000639002 ITGA2P17301 1181 aa4.07□□□□□ -1.76
CD44-239ENST00000639002 CDKN1AP38936 164 aa4.07□□□□□ -1.76
CD44-239ENST00000639002 SEC61BP60468 96 aaKnown RBP4.07□□□□□ -1.76
CD44-239ENST00000639002 EFNB1P98172 346 aa4.07□□□□□ -1.76
CD44-239ENST00000639002 KCNT1Q5JUK3 1230 aa4.07□□□□□ -1.76
CD44-239ENST00000639002 TAOK1Q7L7X3 1001 aa4.07□□□□□ -1.76
CD44-239ENST00000639002 CPOQ8IVL8 374 aa4.07□□□□□ -1.76
CD44-239ENST00000639002 C1orf87Q8N0U7 546 aa4.07□□□□□ -1.76
CD44-239ENST00000639002 OR2AK2Q8NG84 335 aa4.07□□□□□ -1.76
CD44-239ENST00000639002 CCT6BQ92526 530 aa4.07□□□□□ -1.76
CD44-239ENST00000639002 ZNF501Q96CX3 271 aaPredicted RBP4.07□□□□□ -1.76
CD44-239ENST00000639002 ALG14Q96F25 216 aa4.07□□□□□ -1.76
CD44-239ENST00000639002 SIN3AQ96ST3 1273 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms