RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 SIGLEC16A6NMB1 481 aa19.47■□□□□ 0.71
CLN3-262ENST00000637699 TEX33O43247 280 aa19.47■□□□□ 0.71
CLN3-262ENST00000637699 PRAMEF11O60813 436 aa19.47■□□□□ 0.71
CLN3-262ENST00000637699 ELFN1P0C7U0 828 aa19.47■□□□□ 0.71
CLN3-262ENST00000637699 CCL4P13236 92 aa19.47■□□□□ 0.71
CLN3-262ENST00000637699 SERPINA4P29622 427 aa19.47■□□□□ 0.71
CLN3-262ENST00000637699 ZNF143P52747 638 aaPredicted RBP19.47■□□□□ 0.71
CLN3-262ENST00000637699 MAZP56270 477 aaKnown RBP19.47■□□□□ 0.71
CLN3-262ENST00000637699 OR1D5P58170 312 aa19.47■□□□□ 0.71
CLN3-262ENST00000637699 TMEM164Q5U3C3 297 aa19.47■□□□□ 0.71
CLN3-262ENST00000637699 LIPIQ6XZB0 460 aa19.47■□□□□ 0.71
CLN3-262ENST00000637699 PIM3Q86V86 326 aa19.47■□□□□ 0.71
CLN3-262ENST00000637699 C3orf20Q8ND61 904 aa19.47■□□□□ 0.71
CLN3-262ENST00000637699 VPS16Q9H269 839 aa19.47■□□□□ 0.71
CLN3-262ENST00000637699 LRRC19Q9H756 370 aa19.47■□□□□ 0.71
CLN3-262ENST00000637699 SPATS2LQ9NUQ6 558 aaKnown RBP19.47■□□□□ 0.71
CLN3-262ENST00000637699 AKAP7Q9P0M2 348 aaPredicted RBP19.47■□□□□ 0.71
CLN3-262ENST00000637699 DACH1Q9UI36 760 aa19.47■□□□□ 0.71
CLN3-262ENST00000637699 ARHGEF17Q96PE2 2063 aaPredicted RBP19.47■□□□□ 0.71
CLN3-262ENST00000637699 TNFRSF10CO14798 259 aa19.46■□□□□ 0.71
CLN3-262ENST00000637699 EPHB6O15197 1021 aa19.46■□□□□ 0.71
CLN3-262ENST00000637699 FGF10O15520 208 aaPredicted RBP19.46■□□□□ 0.71
CLN3-262ENST00000637699 PALMO75781 387 aa19.46■□□□□ 0.71
CLN3-262ENST00000637699 CPNE6O95741 557 aa19.46■□□□□ 0.71
CLN3-262ENST00000637699 CALB1P05937 261 aa19.46■□□□□ 0.71
CLN3-262ENST00000637699 EEF1GP26641 437 aaKnown RBP19.46■□□□□ 0.71
CLN3-262ENST00000637699 CD82P27701 267 aa19.46■□□□□ 0.71
CLN3-262ENST00000637699 ALDH4A1P30038 563 aa19.46■□□□□ 0.71
CLN3-262ENST00000637699 TRIM23P36406 574 aa19.46■□□□□ 0.71
CLN3-262ENST00000637699 PAPOLAP51003 745 aaKnown RBP19.46■□□□□ 0.71
CLN3-262ENST00000637699 GSCP56915 257 aaPredicted RBP19.46■□□□□ 0.71
CLN3-262ENST00000637699 JAM2P57087 298 aa19.46■□□□□ 0.71
CLN3-262ENST00000637699 TPI1P60174 286 aa19.46■□□□□ 0.71
CLN3-262ENST00000637699 RPL7AP62424 266 aaKnown RBP19.46■□□□□ 0.71
CLN3-262ENST00000637699 CLCA4Q14CN2 919 aa19.46■□□□□ 0.71
CLN3-262ENST00000637699 CLEC16AQ2KHT3 1053 aa19.46■□□□□ 0.71
CLN3-262ENST00000637699 DNAJC24Q6P3W2 148 aa19.46■□□□□ 0.71
CLN3-262ENST00000637699 PHF13Q86YI8 300 aaPredicted RBP19.46■□□□□ 0.71
CLN3-262ENST00000637699 PELI3Q8N2H9 469 aa19.46■□□□□ 0.71
CLN3-262ENST00000637699 RCBTB1Q8NDN9 531 aa19.46■□□□□ 0.71
CLN3-262ENST00000637699 MCEEQ96PE7 176 aa19.46■□□□□ 0.71
CLN3-262ENST00000637699 SLC39A8Q9C0K1 460 aa19.46■□□□□ 0.71
CLN3-262ENST00000637699 WDR26Q9H7D7 661 aa19.46■□□□□ 0.71
CLN3-262ENST00000637699 SEPT11Q9NVA2 429 aaKnown RBP19.46■□□□□ 0.71
CLN3-262ENST00000637699 GPATCH2LQ9NWQ4 482 aa19.46■□□□□ 0.71
CLN3-262ENST00000637699 PRSS38A1L453 326 aa19.45■□□□□ 0.7
CLN3-262ENST00000637699 ANKRD62A6NC57 917 aa19.45■□□□□ 0.7
CLN3-262ENST00000637699 RHPN2P1A8MT19 583 aa19.45■□□□□ 0.7
CLN3-262ENST00000637699 PPFIA2O75334 1257 aa19.45■□□□□ 0.7
CLN3-262ENST00000637699 HOXC4P09017 264 aaPredicted RBP19.45■□□□□ 0.7
CLN3-262ENST00000637699 STAT1P42224 750 aa19.45■□□□□ 0.7
CLN3-262ENST00000637699 CSNK1DP48730 415 aa19.45■□□□□ 0.7
CLN3-262ENST00000637699 NDST2P52849 883 aa19.45■□□□□ 0.7
CLN3-262ENST00000637699 BCL2L1Q07817 233 aa19.45■□□□□ 0.7
CLN3-262ENST00000637699 ACOX1Q15067 660 aa19.45■□□□□ 0.7
CLN3-262ENST00000637699 PNCKQ6P2M8 343 aa19.45■□□□□ 0.7
CLN3-262ENST00000637699 KIAA1524Q8TCG1 905 aa19.45■□□□□ 0.7
CLN3-262ENST00000637699 NUDT22Q9BRQ3 303 aa19.45■□□□□ 0.7
CLN3-262ENST00000637699 SLC25A18Q9H1K4 315 aa19.45■□□□□ 0.7
CLN3-262ENST00000637699 CLSTN2Q9H4D0 955 aa19.45■□□□□ 0.7
CLN3-262ENST00000637699 CARS2Q9HA77 564 aaKnown RBP19.45■□□□□ 0.7
CLN3-262ENST00000637699 ARHGAP42A6NI28 874 aa19.44■□□□□ 0.7
CLN3-262ENST00000637699 CCNB1P14635 433 aa19.44■□□□□ 0.7
CLN3-262ENST00000637699 GM2AP17900 193 aa19.44■□□□□ 0.7
CLN3-262ENST00000637699 AIF1P55008 147 aa19.44■□□□□ 0.7
CLN3-262ENST00000637699 POLR2LP62875 67 aaKnown RBP19.44■□□□□ 0.7
CLN3-262ENST00000637699 TSR1Q2NL82 804 aaKnown RBP19.44■□□□□ 0.7
CLN3-262ENST00000637699 COLEC12Q5KU26 742 aa19.44■□□□□ 0.7
CLN3-262ENST00000637699 AFMIDQ63HM1 303 aa19.44■□□□□ 0.7
CLN3-262ENST00000637699 ZNF574Q6ZN55 896 aaPredicted RBP19.44■□□□□ 0.7
CLN3-262ENST00000637699 DPPA4Q7L190 304 aa19.44■□□□□ 0.7
CLN3-262ENST00000637699 MON1BQ7L1V2 547 aa19.44■□□□□ 0.7
CLN3-262ENST00000637699 ZDHHC1Q8WTX9 485 aa19.44■□□□□ 0.7
CLN3-262ENST00000637699 ECHDC3Q96DC8 303 aa19.44■□□□□ 0.7
CLN3-262ENST00000637699 CNPY3Q9BT09 278 aa19.44■□□□□ 0.7
CLN3-262ENST00000637699 FUCA2Q9BTY2 467 aa19.44■□□□□ 0.7
CLN3-262ENST00000637699 CINPQ9BW66 212 aaPredicted RBP19.44■□□□□ 0.7
CLN3-262ENST00000637699 GEMIN8Q9NWZ8 242 aaKnown RBP19.44■□□□□ 0.7
CLN3-262ENST00000637699 DONSONQ9NYP3 566 aa19.44■□□□□ 0.7
CLN3-262ENST00000637699 FLNCQ14315 2725 aa19.43■□□□□ 0.7
CLN3-262ENST00000637699 TCRBV5S1A1TA0A578 114 aa19.43■□□□□ 0.7
CLN3-262ENST00000637699 IQCJ-SCHIP1C9J366 451 aaPredicted RBP19.43■□□□□ 0.7
CLN3-262ENST00000637699 STMND1H3BQB6 276 aa19.43■□□□□ 0.7
CLN3-262ENST00000637699 PDE2AO00408 941 aaPredicted RBP19.43■□□□□ 0.7
CLN3-262ENST00000637699 FGF1P05230 155 aa19.43■□□□□ 0.7
CLN3-262ENST00000637699 SYCP1Q15431 976 aa19.43■□□□□ 0.7
CLN3-262ENST00000637699 NRROSQ86YC3 692 aa19.43■□□□□ 0.7
CLN3-262ENST00000637699 GPBAR1Q8TDU6 330 aa19.43■□□□□ 0.7
CLN3-262ENST00000637699 B3GNT4Q9C0J1 378 aa19.43■□□□□ 0.7
CLN3-262ENST00000637699 SDK2Q58EX2 2172 aa19.43■□□□□ 0.7
CLN3-262ENST00000637699 IGHV5-10-1A0A0J9YXX1 117 aa19.42■□□□□ 0.7
CLN3-262ENST00000637699 ECEL1O95672 775 aa19.42■□□□□ 0.7
CLN3-262ENST00000637699 FUCA1P04066 466 aa19.42■□□□□ 0.7
CLN3-262ENST00000637699 FGF3P11487 239 aaPredicted RBP19.42■□□□□ 0.7
CLN3-262ENST00000637699 AK4P27144 223 aaPredicted RBP19.42■□□□□ 0.7
CLN3-262ENST00000637699 SCNN1BP51168 640 aa19.42■□□□□ 0.7
CLN3-262ENST00000637699 TLE1Q04724 770 aa19.42■□□□□ 0.7
CLN3-262ENST00000637699 SRSF1Q07955 248 aaKnown RBP eCLIP19.42■□□□□ 0.7
CLN3-262ENST00000637699 ILF3Q12906 894 aaKnown RBP eCLIP19.42■□□□□ 0.7
CLN3-262ENST00000637699 BIRC2Q13490 618 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms