RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 CCDC157Q569K6 752 aa19.31■□□□□ 0.68
CLN3-260ENST00000637578 LRRC57Q8N9N7 239 aa19.31■□□□□ 0.68
CLN3-260ENST00000637578 COQ10AQ96MF6 247 aa19.31■□□□□ 0.68
CLN3-260ENST00000637578 MCCC1Q96RQ3 725 aaPredicted RBP19.31■□□□□ 0.68
CLN3-260ENST00000637578 SEMA3CQ99985 751 aa19.31■□□□□ 0.68
CLN3-260ENST00000637578 APOOQ9BUR5 198 aa19.31■□□□□ 0.68
CLN3-260ENST00000637578 POLR1EQ9GZS1 481 aaKnown RBP19.31■□□□□ 0.68
CLN3-260ENST00000637578 LZTFL1Q9NQ48 299 aa19.31■□□□□ 0.68
CLN3-260ENST00000637578 B4GALT6Q9UBX8 382 aa19.31■□□□□ 0.68
CLN3-260ENST00000637578 U3KQA8 63 aa19.31■□□□□ 0.68
CLN3-260ENST00000637578 CACNA1BQ00975 2339 aa19.31■□□□□ 0.68
CLN3-260ENST00000637578 TDRD6O60522 2096 aaKnown RBP19.3■□□□□ 0.68
CLN3-260ENST00000637578 KNTC1P50748 2209 aa19.3■□□□□ 0.68
CLN3-260ENST00000637578 NEBLO76041 1014 aa19.3■□□□□ 0.68
CLN3-260ENST00000637578 CPP00450 1065 aa19.3■□□□□ 0.68
CLN3-260ENST00000637578 ALPPL2P10696 532 aa19.3■□□□□ 0.68
CLN3-260ENST00000637578 CCNB1P14635 433 aa19.3■□□□□ 0.68
CLN3-260ENST00000637578 TRIM23P36406 574 aa19.3■□□□□ 0.68
CLN3-260ENST00000637578 HS1BP3Q53T59 392 aa19.3■□□□□ 0.68
CLN3-260ENST00000637578 ZNF662Q6ZS27 426 aa19.3■□□□□ 0.68
CLN3-260ENST00000637578 RHOT1Q8IXI2 618 aa19.3■□□□□ 0.68
CLN3-260ENST00000637578 PHACTR4Q8IZ21 702 aa19.3■□□□□ 0.68
CLN3-260ENST00000637578 PLA2G15Q8NCC3 412 aa19.3■□□□□ 0.68
CLN3-260ENST00000637578 PIH1D2Q8WWB5 315 aa19.3■□□□□ 0.68
CLN3-260ENST00000637578 SCRN2Q96FV2 425 aa19.3■□□□□ 0.68
CLN3-260ENST00000637578 APOLD1Q96LR9 279 aa19.3■□□□□ 0.68
CLN3-260ENST00000637578 TCEAL2Q9H3H9 227 aaPredicted RBP19.3■□□□□ 0.68
CLN3-260ENST00000637578 USP29Q9HBJ7 922 aa19.3■□□□□ 0.68
CLN3-260ENST00000637578 RBM22Q9NW64 420 aaKnown RBP eCLIP19.3■□□□□ 0.68
CLN3-260ENST00000637578 SPASTQ9UBP0 616 aa19.3■□□□□ 0.68
CLN3-260ENST00000637578 ZMIZ1Q9ULJ6 1067 aa19.3■□□□□ 0.68
CLN3-260ENST00000637578 GCATO75600 419 aa19.29■□□□□ 0.68
CLN3-260ENST00000637578 HOXC4P09017 264 aaPredicted RBP19.29■□□□□ 0.68
CLN3-260ENST00000637578 TNNT1P13805 278 aa19.29■□□□□ 0.68
CLN3-260ENST00000637578 PPIDQ08752 370 aaKnown RBP19.29■□□□□ 0.68
CLN3-260ENST00000637578 NFATC4Q14934 902 aa19.29■□□□□ 0.68
CLN3-260ENST00000637578 ZFYVE27Q5T4F4 411 aa19.29■□□□□ 0.68
CLN3-260ENST00000637578 ARMC12Q5T9G4 340 aa19.29■□□□□ 0.68
CLN3-260ENST00000637578 MARCH9Q86YJ5 346 aa19.29■□□□□ 0.68
CLN3-260ENST00000637578 RBFAQ8N0V3 343 aa19.29■□□□□ 0.68
CLN3-260ENST00000637578 CACTIN-AS1Q8N1I8 211 aa19.29■□□□□ 0.68
CLN3-260ENST00000637578 RNF10Q8N5U6 811 aaKnown RBP19.29■□□□□ 0.68
CLN3-260ENST00000637578 ARRDC2Q8TBH0 407 aa19.29■□□□□ 0.68
CLN3-260ENST00000637578 PDCD6IPQ8WUM4 868 aaKnown RBP19.29■□□□□ 0.68
CLN3-260ENST00000637578 DDX56Q9NY93 547 aaKnown RBP19.29■□□□□ 0.68
CLN3-260ENST00000637578 APOBEC3BQ9UH17 382 aaKnown RBP19.29■□□□□ 0.68
CLN3-260ENST00000637578 RAI2Q9Y5P3 530 aa19.29■□□□□ 0.68
CLN3-260ENST00000637578 CAPN6Q9Y6Q1 641 aa19.29■□□□□ 0.68
CLN3-260ENST00000637578 SHROOM3Q8TF72 1996 aa19.29■□□□□ 0.68
CLN3-260ENST00000637578 WDFY3Q8IZQ1 3526 aa19.28■□□□□ 0.68
CLN3-260ENST00000637578 FREM2Q5SZK8 3169 aa19.28■□□□□ 0.68
CLN3-260ENST00000637578 HEXIM1O94992 359 aaKnown RBP19.28■□□□□ 0.68
CLN3-260ENST00000637578 PDHA1P08559 390 aa19.28■□□□□ 0.68
CLN3-260ENST00000637578 NFKBIAP25963 317 aa19.28■□□□□ 0.68
CLN3-260ENST00000637578 VIPR1P32241 457 aa19.28■□□□□ 0.68
CLN3-260ENST00000637578 PPARDQ03181 441 aa19.28■□□□□ 0.68
CLN3-260ENST00000637578 CNGA3Q16281 694 aa19.28■□□□□ 0.68
CLN3-260ENST00000637578 TAZQ16635 292 aa19.28■□□□□ 0.68
CLN3-260ENST00000637578 ZCCHC8Q6NZY4 707 aaKnown RBP19.28■□□□□ 0.68
CLN3-260ENST00000637578 CCDC13Q8IYE1 715 aa19.28■□□□□ 0.68
CLN3-260ENST00000637578 PAF1Q8N7H5 531 aa19.28■□□□□ 0.68
CLN3-260ENST00000637578 KIAA1524Q8TCG1 905 aa19.28■□□□□ 0.68
CLN3-260ENST00000637578 LRRC61Q9BV99 259 aa19.28■□□□□ 0.68
CLN3-260ENST00000637578 KCTD5Q9NXV2 234 aa19.28■□□□□ 0.68
CLN3-260ENST00000637578 PYCARDQ9ULZ3 195 aa19.28■□□□□ 0.68
CLN3-260ENST00000637578 OR1A2Q9Y585 309 aa19.28■□□□□ 0.68
CLN3-260ENST00000637578 FAM149AA5PLN7 773 aa19.27■□□□□ 0.68
CLN3-260ENST00000637578 NPIPB15A6NHN6 443 aaPredicted RBP19.27■□□□□ 0.68
CLN3-260ENST00000637578 A8MX80 341 aa19.27■□□□□ 0.68
CLN3-260ENST00000637578 LMO7DNF2Z398 122 aa19.27■□□□□ 0.68
CLN3-260ENST00000637578 PCCBP05166 539 aa19.27■□□□□ 0.68
CLN3-260ENST00000637578 LHCGRP22888 699 aa19.27■□□□□ 0.68
CLN3-260ENST00000637578 HTR1BP28222 390 aa19.27■□□□□ 0.68
CLN3-260ENST00000637578 HK3P52790 923 aa19.27■□□□□ 0.68
CLN3-260ENST00000637578 KIAA1024LP59773 190 aa19.27■□□□□ 0.68
CLN3-260ENST00000637578 E2F1Q01094 437 aa19.27■□□□□ 0.68
CLN3-260ENST00000637578 DSC2Q02487 901 aa19.27■□□□□ 0.68
CLN3-260ENST00000637578 ALG11Q2TAA5 492 aa19.27■□□□□ 0.68
CLN3-260ENST00000637578 PRRT3Q5FWE3 981 aa19.27■□□□□ 0.68
CLN3-260ENST00000637578 FAXCQ5TGI0 409 aa19.27■□□□□ 0.68
CLN3-260ENST00000637578 ESRP1Q6NXG1 681 aaKnown RBP19.27■□□□□ 0.68
CLN3-260ENST00000637578 LMX1AQ8TE12 382 aa19.27■□□□□ 0.68
CLN3-260ENST00000637578 LRRN4Q8WUT4 740 aa19.27■□□□□ 0.68
CLN3-260ENST00000637578 ZCCHC14Q8WYQ9 949 aaKnown RBP19.27■□□□□ 0.68
CLN3-260ENST00000637578 OLFM3Q96PB7 478 aa19.27■□□□□ 0.68
CLN3-260ENST00000637578 LGMNQ99538 433 aa19.27■□□□□ 0.68
CLN3-260ENST00000637578 IL12RB2Q99665 862 aa19.27■□□□□ 0.68
CLN3-260ENST00000637578 SLC13A1Q9BZW2 595 aa19.27■□□□□ 0.68
CLN3-260ENST00000637578 CLPBQ9H078 707 aa19.27■□□□□ 0.68
CLN3-260ENST00000637578 HAUS2Q9NVX0 235 aa19.27■□□□□ 0.68
CLN3-260ENST00000637578 DKK4Q9UBT3 224 aa19.27■□□□□ 0.68
CLN3-260ENST00000637578 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.27■□□□□ 0.68
CLN3-260ENST00000637578 GOLGA4Q13439 2230 aaKnown RBP19.27■□□□□ 0.68
CLN3-260ENST00000637578 PSMD11O00231 422 aa19.27■□□□□ 0.67
CLN3-260ENST00000637578 TAF4O00268 1085 aa19.27■□□□□ 0.67
CLN3-260ENST00000637578 APOL1O14791 398 aa19.27■□□□□ 0.67
CLN3-260ENST00000637578 PRLP01236 227 aa19.27■□□□□ 0.67
CLN3-260ENST00000637578 HLA-DQB2P05538 268 aa19.27■□□□□ 0.67
CLN3-260ENST00000637578 GP1BAP07359 652 aa19.27■□□□□ 0.67
CLN3-260ENST00000637578 CYP2A6P11509 494 aaPredicted RBP19.27■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms