RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 TPGS1Q6ZTW0 290 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ASB18Q6ZVZ8 466 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 SLC43A2Q8N370 569 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 TMEM125Q96AQ2 219 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 RADILQ96JH8 1075 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 TTYH1Q9H313 450 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-212ENST00000636194 HIF1ANQ9NWT6 349 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 GPRC5BQ9NZH0 403 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ZNF224Q9NZL3 707 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 CNOT11Q9UKZ1 510 aaKnown RBP6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ANKRD33BA6NCL7 494 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 OR2AT4A6NND4 320 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 AGRPO00253 132 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 LRIG2O94898 1065 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 RPIAP49247 311 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 APLP1P51693 650 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 SULT2A1Q06520 285 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 UBE2SQ16763 222 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 EXOSC6Q5RKV6 272 aaKnown RBP6.03□□□□□ -1.44
SCN1A-212ENST00000636194 RESP18Q5W5W9 173 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 SPESP1Q6UW49 350 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 KDELC1Q6UW63 502 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 HDAC7Q8WUI4 952 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 TRAPPC12Q8WVT3 735 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 NELL1Q92832 810 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 PTCD3Q96EY7 689 aaKnown RBP6.03□□□□□ -1.44
SCN1A-212ENST00000636194 C11orf24Q96F05 449 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-212ENST00000636194 COPS4Q9BT78 406 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 NIF3L1Q9GZT8 377 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 RC3H2Q9HBD1 1191 aaKnown RBP6.03□□□□□ -1.44
SCN1A-212ENST00000636194 TCF7L2Q9NQB0 619 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 PCDHA11Q9Y5I1 949 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 SSX5O60225 188 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ENDOUP21128 410 aaKnown RBP6.03□□□□□ -1.44
SCN1A-212ENST00000636194 PTGS2P35354 604 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 POLD2P49005 469 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 TUFMP49411 452 aaKnown RBP6.03□□□□□ -1.44
SCN1A-212ENST00000636194 NFE2L1Q14494 772 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ACAP1Q15027 740 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 MED22Q15528 200 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 AGKQ53H12 422 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 PDSS1Q5T2R2 415 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 UBE2R2Q712K3 238 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-212ENST00000636194 MKL1Q969V6 931 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 MSANTD3Q96H12 275 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 RNF145Q96MT1 663 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 AIFM3Q96NN9 605 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 TRIM9Q9C026 710 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 DPP3Q9NY33 737 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 CLASP1Q7Z460 1538 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 A0A075B6Q4 140 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 MPZL2O60487 215 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 PSMA1P25786 263 aaKnown RBP6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ECH1Q13011 328 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 DUSP4Q13115 394 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.03□□□□□ -1.443e-6■■■□□ 18.5
SCN1A-212ENST00000636194 MARC1Q5VT66 337 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ALG1LQ6GMV1 187 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ACAD10Q6JQN1 1059 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ZNF746Q6NUN9 644 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-212ENST00000636194 AKAP14Q86UN6 197 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 LHFPL3Q86UP9 236 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 RANBP3LQ86VV4 465 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-212ENST00000636194 OR51D1Q8NGF3 324 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 SPATA22Q8NHS9 363 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 PLEKHO2Q8TD55 490 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 JSRP1Q96MG2 331 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-212ENST00000636194 PFDN5Q99471 154 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ATP13A3Q9H7F0 1226 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 NT5MQ9NPB1 228 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 PDXKO00764 312 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 MEIS2O14770 477 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ADAMTS3O15072 1205 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 HSPA12AO43301 675 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 SEC24AO95486 1093 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 IFNAR1P17181 557 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 PRR5P85299 388 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 NEDD8Q15843 81 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ZMYM1Q5SVZ6 1142 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 PLET1Q6UQ28 207 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ZNF730Q6ZMV8 503 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ZNF554Q86TJ5 538 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 SCGB1C1Q8TD33 95 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 PSKH2Q96QS6 385 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 SEPHS2Q99611 448 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ZNF510Q9Y2H8 683 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 GPSM3Q9Y4H4 160 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 RALGAPA1Q6GYQ0 2036 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 CEP290O15078 2479 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ZSCAN5CA6NGD5 496 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-212ENST00000636194 PRMT5O14744 637 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ALOX5P09917 674 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 SLC35G4P0C7Q5 338 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 DNAJB2P25686 324 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 CLCN7P51798 805 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 CRY1Q16526 586 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 RFX4Q33E94 735 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ANXA8L1Q5VT79 327 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 CHSY3Q70JA7 882 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 MIB1Q86YT6 1006 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms