RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 ECEL1O95672 775 aa19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 KRT14P02533 472 aa19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 FGF1P05230 155 aa19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 C6P13671 934 aa19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 RPL22P35268 128 aaKnown RBP19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 RALGDSQ12967 914 aa19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 NAPEPLDQ6IQ20 393 aa19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 LIPIQ6XZB0 460 aa19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 ASCL5Q7RTU5 278 aa19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 PRUNE1Q86TP1 453 aa19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 ZCCHC9Q8N567 271 aaKnown RBP19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 SLC25A41Q8N5S1 370 aa19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 GLIS1Q8NBF1 620 aa19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 KIF18AQ8NI77 898 aa19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 CEP76Q8TAP6 659 aa19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 LYSMD1Q96S90 227 aa19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 TBL1YQ9BQ87 522 aa19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 DDX47Q9H0S4 455 aaKnown RBP19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 ETNK1Q9HBU6 452 aa19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 AASDHPPTQ9NRN7 309 aa19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 CACNA1EQ15878 2313 aa19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 ZFHX2Q9C0A1 2572 aaPredicted RBP19.15■□□□□ 0.66
SQSTM1-216ENST00000626660 A0A1B0GTW7 788 aa19.15■□□□□ 0.66
SQSTM1-216ENST00000626660 PRAMEF26H0Y7S4 382 aa19.15■□□□□ 0.66
SQSTM1-216ENST00000626660 PSMD11O00231 422 aa19.15■□□□□ 0.66
SQSTM1-216ENST00000626660 PDE2AO00408 941 aaPredicted RBP19.15■□□□□ 0.66
SQSTM1-216ENST00000626660 BCAT2O15382 392 aaPredicted RBP19.15■□□□□ 0.66
SQSTM1-216ENST00000626660 AGTP01019 485 aa19.15■□□□□ 0.66
SQSTM1-216ENST00000626660 ZSCAN5DPP0CG00 497 aa19.15■□□□□ 0.66
SQSTM1-216ENST00000626660 ZNF30P17039 623 aa19.15■□□□□ 0.66
SQSTM1-216ENST00000626660 HNRNPA2B1P22626 353 aaKnown RBP19.15■□□□□ 0.66
SQSTM1-216ENST00000626660 CKAP4Q07065 602 aaKnown RBP19.15■□□□□ 0.66
SQSTM1-216ENST00000626660 ACOX1Q15067 660 aa19.15■□□□□ 0.66
SQSTM1-216ENST00000626660 SLC1A5Q15758 541 aa19.15■□□□□ 0.66
SQSTM1-216ENST00000626660 CNGA3Q16281 694 aa19.15■□□□□ 0.66
SQSTM1-216ENST00000626660 SIRPB2Q5JXA9 342 aa19.15■□□□□ 0.66
SQSTM1-216ENST00000626660 DENND2CQ68D51 928 aa19.15■□□□□ 0.66
SQSTM1-216ENST00000626660 CRTC1Q6UUV9 634 aa19.15■□□□□ 0.66
SQSTM1-216ENST00000626660 KLHDC8BQ8IXV7 354 aa19.15■□□□□ 0.66
SQSTM1-216ENST00000626660 CCHCR1Q8TD31 782 aa19.15■□□□□ 0.66
SQSTM1-216ENST00000626660 RUBCNQ92622 972 aa19.15■□□□□ 0.66
SQSTM1-216ENST00000626660 EBF2Q9HAK2 575 aa19.15■□□□□ 0.66
SQSTM1-216ENST00000626660 KCTD5Q9NXV2 234 aa19.15■□□□□ 0.66
SQSTM1-216ENST00000626660 KNL1Q8NG31 2342 aa19.14■□□□□ 0.66
SQSTM1-216ENST00000626660 FAM186AA6NE01 2351 aa19.14■□□□□ 0.66
SQSTM1-216ENST00000626660 C1orf232A0A0U1RR37 186 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 AP2A1O95782 977 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 PAK4O96013 591 aaPredicted RBP19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 ATXN1LP0C7T5 689 aaKnown RBP19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 LHCGRP22888 699 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 ADRA1AP35348 466 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 CHRNA4P43681 627 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 RACK1P63244 317 aaKnown RBP19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 BASP1P80723 227 aaKnown RBP19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 SEMA5AQ13591 1074 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 STAT4Q14765 748 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 PTPRRQ15256 657 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 PPP1R7Q15435 360 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 TEAD4Q15561 434 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 TRIP13Q15645 432 aaPredicted RBP19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 DUOXA1Q1HG43 343 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 PEAR1Q5VY43 1037 aaPredicted RBP19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 LRRC66Q68CR7 880 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 LINC00523Q86TU6 105 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 TSPAN33Q86UF1 283 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 KLHL7Q8IXQ5 586 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 PDCD7Q8N8D1 485 aaKnown RBP19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 DENND6BQ8NEG7 585 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 SKA1Q96BD8 255 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 SMIM14Q96QK8 99 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 APOL2Q9BQE5 337 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 ORAI3Q9BRQ5 295 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 MAGEE1Q9HCI5 957 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 TM9SF3Q9HD45 589 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 TMEM74BQ9NUR3 256 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 HACD3Q9P035 362 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 PCYOX1Q9UHG3 505 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 CDC23Q9UJX2 597 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 COQ6Q9Y2Z9 468 aa19.14■□□□□ 0.65
SQSTM1-216ENST00000626660 CFAP54Q96N23 3096 aa19.13■□□□□ 0.65
SQSTM1-216ENST00000626660 LRP3O75074 770 aa19.13■□□□□ 0.65
SQSTM1-216ENST00000626660 RECQL5O94762 991 aaPredicted RBP19.13■□□□□ 0.65
SQSTM1-216ENST00000626660 CFIP05156 583 aa19.13■□□□□ 0.65
SQSTM1-216ENST00000626660 PIRTP0C851 137 aa19.13■□□□□ 0.65
SQSTM1-216ENST00000626660 VPS41P49754 854 aa19.13■□□□□ 0.65
SQSTM1-216ENST00000626660 AFF3P51826 1226 aaKnown RBP19.13■□□□□ 0.65
SQSTM1-216ENST00000626660 GPS1Q13098 491 aa19.13■□□□□ 0.65
SQSTM1-216ENST00000626660 TUBB2AQ13885 445 aa19.13■□□□□ 0.65
SQSTM1-216ENST00000626660 FGL2Q14314 439 aa19.13■□□□□ 0.65
SQSTM1-216ENST00000626660 SPARCL1Q14515 664 aa19.13■□□□□ 0.65
SQSTM1-216ENST00000626660 KCTD11Q693B1 232 aa19.13■□□□□ 0.65
SQSTM1-216ENST00000626660 RANBP10Q6VN20 620 aa19.13■□□□□ 0.65
SQSTM1-216ENST00000626660 C1orf216Q8TAB5 229 aa19.13■□□□□ 0.65
SQSTM1-216ENST00000626660 SLC6A18Q96N87 628 aa19.13■□□□□ 0.65
SQSTM1-216ENST00000626660 LENG8Q96PV6 779 aaPredicted RBP19.13■□□□□ 0.65
SQSTM1-216ENST00000626660 MYOCQ99972 504 aa19.13■□□□□ 0.65
SQSTM1-216ENST00000626660 TUBB2BQ9BVA1 445 aa19.13■□□□□ 0.65
SQSTM1-216ENST00000626660 GPR63Q9BZJ6 419 aa19.13■□□□□ 0.65
SQSTM1-216ENST00000626660 TRABDQ9H4I3 376 aa19.13■□□□□ 0.65
SQSTM1-216ENST00000626660 FZD3Q9NPG1 666 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms