RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 RAB6BQ9NRW1 208 aa16.6■□□□□ 0.25
SHKBP1-219ENST00000599575 NCDNQ9UBB6 729 aa16.6■□□□□ 0.25
SHKBP1-219ENST00000599575 EIF2B4Q9UI10 523 aaKnown RBP16.6■□□□□ 0.25
SHKBP1-219ENST00000599575 ITM2BQ9Y287 266 aa16.6■□□□□ 0.25
SHKBP1-219ENST00000599575 EML5Q05BV3 1969 aa16.6■□□□□ 0.25
SHKBP1-219ENST00000599575 NPIPB15A6NHN6 443 aaPredicted RBP16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 LZTS3O60299 673 aaPredicted RBP16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 MMP20O60882 483 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 PPFIA2O75334 1257 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 KRT14P02533 472 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 PYGLP06737 847 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 ATXN1LP0C7T5 689 aaKnown RBP16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 C6P13671 934 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 MPLP40238 635 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 PDE1BQ01064 536 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 STAT4Q14765 748 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 SIRPB2Q5JXA9 342 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 PLA2G2CQ5R387 149 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 ARMC3Q5W041 872 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 ZDHHC20Q5W0Z9 365 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 SEL1L3Q68CR1 1132 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 SLC23A3Q6PIS1 610 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 CRTC1Q6UUV9 634 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 ZNF765Q7L2R6 523 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 DCP2Q8IU60 420 aaKnown RBP16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 NRSN1Q8IZ57 195 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 MFSD2AQ8NA29 543 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 TMEM145Q8NBT3 493 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 SPATA4Q8NEY3 305 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 SNX19Q92543 992 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 PIGKQ92643 395 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 SERAC1Q96JX3 654 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 TBL1YQ9BQ87 522 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 WRAP53Q9BUR4 548 aaKnown RBP16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 ZDHHC5Q9C0B5 715 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 ZFYVE1Q9HBF4 777 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 ETNK1Q9HBU6 452 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 SMARCAL1Q9NZC9 954 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 GGT7Q9UJ14 662 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 NEU2Q9Y3R4 380 aa16.59■□□□□ 0.25
SHKBP1-219ENST00000599575 MYO15AQ9UKN7 3530 aa16.58■□□□□ 0.25
SHKBP1-219ENST00000599575 FPGTO14772 594 aa16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 NDC80O14777 642 aa16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 WNT9AO14904 365 aa16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 URI1O94763 535 aaPredicted RBP16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 PAK4O96013 591 aaPredicted RBP16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 CTPS1P17812 591 aa16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 LHCGRP22888 699 aa16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 MAT2AP31153 395 aaKnown RBP16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 HMGCLP35914 325 aa16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 MAGEA6P43360 314 aa16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 LMAN1P49257 510 aa16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 SARNPP82979 210 aaKnown RBP16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 LAMB3Q13751 1172 aa16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 GALNT3Q14435 633 aa16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 LRRC14Q15048 493 aa16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 CNGA3Q16281 694 aa16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 LPAL2Q16609 132 aa16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 LRRC73Q5JTD7 316 aa16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 LRRC66Q68CR7 880 aa16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 ARMCX6Q7L4S7 300 aa16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 MAATS1Q7Z4T9 603 aa16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 DEFB119Q8N690 84 aa16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 PDCD7Q8N8D1 485 aaKnown RBP16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 MNS1Q8NEH6 495 aa16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 CENPTQ96BT3 561 aa16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 COQ10AQ96MF6 247 aa16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 FICDQ9BVA6 458 aa16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 DDX47Q9H0S4 455 aaKnown RBP16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 TM9SF3Q9HD45 589 aa16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 NFKBIL1Q9UBC1 381 aaPredicted RBP16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 SLC6A14Q9UN76 642 aa16.58■□□□□ 0.24
SHKBP1-219ENST00000599575 DMDP11532 3685 aa16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 WDR87Q6ZQQ6 2873 aa16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 C1orf232A0A0U1RR37 186 aa16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 SMAPO00193 183 aa16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 PDE2AO00408 941 aaPredicted RBP16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 VILLO15195 856 aa16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 SLC31A1O15431 190 aa16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 RECQL5O94762 991 aaPredicted RBP16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 AGTP01019 485 aa16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 APRTP07741 180 aa16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 ALPIP09923 528 aa16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 ZNF806P0C7X5 589 aa16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 ITIH2P19823 946 aa16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 TPSB2P20231 275 aa16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 TEAD1P28347 426 aa16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 CD38P28907 300 aa16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 STC1P52823 247 aa16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 YPEL5P62699 121 aa16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 DR1Q01658 176 aa16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 PTSQ03393 145 aa16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 DPTQ07507 201 aa16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 CDH17Q12864 832 aa16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 PPP1R7Q15435 360 aa16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 TPSAB1Q15661 275 aa16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 CSRP2Q16527 193 aa16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 CDKN3Q16667 212 aa16.57■□□□□ 0.24
SHKBP1-219ENST00000599575 KDELC2Q7Z4H8 507 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms