RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 SAP25Q8TEE9 199 aa13.9□□□□□ -0.18
UPF1-205ENST00000598209 SCRN2Q96FV2 425 aa13.9□□□□□ -0.18
UPF1-205ENST00000598209 QKIQ96PU8 341 aaKnown RBP eCLIP13.9□□□□□ -0.18
UPF1-205ENST00000598209 MCCC1Q96RQ3 725 aaPredicted RBP13.9□□□□□ -0.18
UPF1-205ENST00000598209 PCDH9Q9HC56 1237 aa13.9□□□□□ -0.18
UPF1-205ENST00000598209 BTBD3Q9Y2F9 522 aa13.9□□□□□ -0.18
UPF1-205ENST00000598209 PPIL1Q9Y3C6 166 aa13.9□□□□□ -0.18
UPF1-205ENST00000598209 LRP4O75096 1905 aa13.9□□□□□ -0.18
UPF1-205ENST00000598209 COL5A1P20908 1838 aaPredicted RBP13.9□□□□□ -0.18
UPF1-205ENST00000598209 SPTY2D1-AS1A0A0U1RR47 76 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 SPAARA0A1B0GVQ0 90 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 GOLGA8CPA6NN73 597 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 HACD1B0YJ81 288 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 H7C0C1 242 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 MTSS1O43312 755 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 TJP3O95049 919 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 PRLP01236 227 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 PCCBP05166 539 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 ALPIP09923 528 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 GM2AP17900 193 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 LHCGRP22888 699 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 GRK6P43250 576 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 ATP5OP48047 213 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 THOP1P52888 689 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 YPEL5P62699 121 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 OTUD4Q01804 1114 aaKnown RBP13.89□□□□□ -0.19
UPF1-205ENST00000598209 WASHC5Q12768 1159 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 XRCC4Q13426 336 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 ARHGEF7Q14155 803 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 FZD2Q14332 565 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 TRIP6Q15654 476 aaKnown RBP13.89□□□□□ -0.19
UPF1-205ENST00000598209 TPRG1LQ5T0D9 272 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 TSPAN33Q86UF1 283 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 LPCAT1Q8NF37 534 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 ACTL9Q8TC94 416 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 IFT43Q96FT9 208 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 IMP4Q96G21 291 aaKnown RBP13.89□□□□□ -0.19
UPF1-205ENST00000598209 HES6Q96HZ4 224 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 TEKT5Q96M29 485 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 SMIM14Q96QK8 99 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 RBM15Q96T37 977 aaKnown RBP eCLIP13.89□□□□□ -0.19
UPF1-205ENST00000598209 SLC25A51Q9H1U9 297 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 GLOD4Q9HC38 313 aa13.89□□□□□ -0.19
UPF1-205ENST00000598209 A0A0J9YYE9 177 aa13.88□□□□□ -0.19
UPF1-205ENST00000598209 TOR1BO14657 336 aa13.88□□□□□ -0.19
UPF1-205ENST00000598209 SDC3O75056 442 aa13.88□□□□□ -0.19
UPF1-205ENST00000598209 TRBC1P01850 177 aa13.88□□□□□ -0.19
UPF1-205ENST00000598209 ADRB1P08588 477 aa13.88□□□□□ -0.19
UPF1-205ENST00000598209 HNF1BP35680 557 aa13.88□□□□□ -0.19
UPF1-205ENST00000598209 RPL26P61254 145 aaKnown RBP13.88□□□□□ -0.19
UPF1-205ENST00000598209 SIM1P81133 766 aaPredicted RBP13.88□□□□□ -0.19
UPF1-205ENST00000598209 FOXK2Q01167 660 aa13.88□□□□□ -0.19
UPF1-205ENST00000598209 PTK2BQ14289 1009 aa13.88□□□□□ -0.19
UPF1-205ENST00000598209 INPP5AQ14642 412 aa13.88□□□□□ -0.19
UPF1-205ENST00000598209 ZNF542PQ5EBM4 170 aa13.88□□□□□ -0.19
UPF1-205ENST00000598209 DENND2CQ68D51 928 aa13.88□□□□□ -0.19
UPF1-205ENST00000598209 ZNF662Q6ZS27 426 aa13.88□□□□□ -0.19
UPF1-205ENST00000598209 KANSL1Q7Z3B3 1105 aa13.88□□□□□ -0.19
UPF1-205ENST00000598209 PARGQ86W56 976 aa13.88□□□□□ -0.19
UPF1-205ENST00000598209 BAHD1Q8TBE0 780 aaPredicted RBP13.88□□□□□ -0.19
UPF1-205ENST00000598209 HTR3CQ8WXA8 447 aa13.88□□□□□ -0.19
UPF1-205ENST00000598209 COQ10AQ96MF6 247 aa13.88□□□□□ -0.19
UPF1-205ENST00000598209 VAT1Q99536 393 aa13.88□□□□□ -0.19
UPF1-205ENST00000598209 CAAP1Q9H8G2 361 aa13.88□□□□□ -0.19
UPF1-205ENST00000598209 LZTFL1Q9NQ48 299 aa13.88□□□□□ -0.19
UPF1-205ENST00000598209 DNAJC28Q9NX36 388 aa13.88□□□□□ -0.19
UPF1-205ENST00000598209 KLHL8Q9P2G9 620 aaPredicted RBP13.88□□□□□ -0.19
UPF1-205ENST00000598209 RPL26L1Q9UNX3 145 aaKnown RBP13.88□□□□□ -0.19
UPF1-205ENST00000598209 A0A0U1RQS6 177 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 CAPN8A6NHC0 703 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 PSMD11O00231 422 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 MT-CYBP00156 380 aaPredicted RBP13.87□□□□□ -0.19
UPF1-205ENST00000598209 PTMAP06454 111 aaKnown RBP13.87□□□□□ -0.19
UPF1-205ENST00000598209 RBL1P28749 1068 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 CD68P34810 354 aaPredicted RBP13.87□□□□□ -0.19
UPF1-205ENST00000598209 EIF3EP60228 445 aaKnown RBP13.87□□□□□ -0.19
UPF1-205ENST00000598209 EIF2B5Q13144 721 aaKnown RBP13.87□□□□□ -0.19
UPF1-205ENST00000598209 MTM1Q13496 603 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 SLC14A2Q15849 920 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 QPCTQ16769 361 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 LRRC66Q68CR7 880 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 CRTC1Q6UUV9 634 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 MACC1Q6ZN28 852 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 HSD11B1LQ7Z5J1 315 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 GLRX5Q86SX6 157 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 ZNF567Q8N184 647 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 CBARPQ8N350 705 aaPredicted RBP13.87□□□□□ -0.19
UPF1-205ENST00000598209 PLA2G15Q8NCC3 412 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 SPATA22Q8NHS9 363 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 TADA1Q96BN2 335 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 NUS1Q96E22 293 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 CDC6Q99741 560 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 FAM118BQ9BPY3 351 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 APOOQ9BUR5 198 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 C10orf88Q9H8K7 445 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 KCTD5Q9NXV2 234 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 DNPEPQ9ULA0 475 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 PPP2R2CQ9Y2T4 447 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 OR1A2Q9Y585 309 aa13.87□□□□□ -0.19
UPF1-205ENST00000598209 GOLGA6L9A6NEM1 432 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms