RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 FAM117AQ9C073 453 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 B3GNT4Q9C0J1 378 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 PDFQ9HBH1 243 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 PISDQ9UG56 409 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 LOXL2Q9Y4K0 774 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 HEMK1Q9Y5R4 338 aaPredicted RBP12.58□□□□□ -0.4
TRIM28-212ENST00000597995 LRP4O75096 1905 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 SCN8AQ9UQD0 1980 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 TMEM191CA6NGB0 347 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 CACNB4O00305 520 aaPredicted RBP12.57□□□□□ -0.4
TRIM28-212ENST00000597995 NUDT21O43809 227 aaKnown RBP12.57□□□□□ -0.4
TRIM28-212ENST00000597995 BUB1BO60566 1050 aaPredicted RBP12.57□□□□□ -0.4
TRIM28-212ENST00000597995 PRAMEF11O60813 436 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 SERPINC1P01008 464 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 FTLP02792 175 aaPredicted RBP12.57□□□□□ -0.4
TRIM28-212ENST00000597995 PCCBP05166 539 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 GZMAP12544 262 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 HGFP14210 728 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 TRIM23P36406 574 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 NDST2P52849 883 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 NFATC3Q12968 1075 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 TCEA2Q15560 299 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 CA9Q16790 459 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 C14orf28Q4W4Y0 310 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 FIGNQ5HY92 759 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 DCUN1D2Q6PH85 259 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 CYP4V2Q6ZWL3 525 aaPredicted RBP12.57□□□□□ -0.4
TRIM28-212ENST00000597995 SPRED1Q7Z699 444 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 TAF8Q7Z7C8 310 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 ZSWIM9Q86XI8 627 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 OR1E3Q8WZA6 343 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 FUBP1Q96AE4 644 aaKnown RBP12.57□□□□□ -0.4
TRIM28-212ENST00000597995 PDXPQ96GD0 296 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 PEBP4Q96S96 227 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 SEMA3CQ99985 751 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 ARHGAP9Q9BRR9 750 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 LRRC19Q9H756 370 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 STARD5Q9NSY2 213 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 GPATCH2LQ9NWQ4 482 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 LRIT1Q9P2V4 623 aa12.57□□□□□ -0.4
TRIM28-212ENST00000597995 MAST4O15021 2626 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 PRAMEF33A0A0G2JMD5 474 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 ANKRD62A6NC57 917 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 TMEM202A6NGA9 273 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 J3KR12 359 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 PDE2AO00408 941 aaPredicted RBP12.56□□□□□ -0.4
TRIM28-212ENST00000597995 ARHGAP6O43182 974 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 PRAMEF10O60809 474 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 RECQL5O94762 991 aaPredicted RBP12.56□□□□□ -0.4
TRIM28-212ENST00000597995 ITIH1P19827 911 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 CD82P27701 267 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 SERPINA4P29622 427 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 POLR2LP62875 67 aaKnown RBP12.56□□□□□ -0.4
TRIM28-212ENST00000597995 NSUN2Q08J23 767 aaKnown RBP eCLIP12.56□□□□□ -0.4
TRIM28-212ENST00000597995 KLHL30Q0D2K2 578 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 RALGDSQ12967 914 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 ARHGEF7Q14155 803 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 HLTFQ14527 1009 aaKnown RBP eCLIP12.56□□□□□ -0.4
TRIM28-212ENST00000597995 CLPPQ16740 277 aaPredicted RBP12.56□□□□□ -0.4
TRIM28-212ENST00000597995 MANEAQ5SRI9 462 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 AFMIDQ63HM1 303 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 KCTD16Q68DU8 428 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 LIPIQ6XZB0 460 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 NYAP1Q6ZVC0 841 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 PRICKLE2Q7Z3G6 844 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 SRLQ86TD4 932 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 DTX1Q86Y01 620 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 CAMK1DQ8IU85 385 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 SLITRK4Q8IW52 837 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 Q8N9G6 341 aaPredicted RBP12.56□□□□□ -0.4
TRIM28-212ENST00000597995 ZSCAN1Q8NBB4 408 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 PLA2G15Q8NCC3 412 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 ECHDC3Q96DC8 303 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 ISCUQ9H1K1 167 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 ATP13A3Q9H7F0 1226 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 FGF22Q9HCT0 170 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 PARVAQ9NVD7 372 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 WDR70Q9NW82 654 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 IL17BQ9UHF5 180 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 PCDHB11Q9Y5F2 797 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 RNF215Q9Y6U7 377 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 BOD1L1Q8NFC6 3051 aa12.56□□□□□ -0.4
TRIM28-212ENST00000597995 ARHGEF17Q96PE2 2063 aaPredicted RBP12.55□□□□□ -0.4
TRIM28-212ENST00000597995 A0A1W2PQJ5 194 aa12.55□□□□□ -0.4
TRIM28-212ENST00000597995 ARHGAP42A6NI28 874 aa12.55□□□□□ -0.4
TRIM28-212ENST00000597995 EIF3CLB5ME19 914 aaKnown RBP12.55□□□□□ -0.4
TRIM28-212ENST00000597995 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.55□□□□□ -0.4
TRIM28-212ENST00000597995 PYCARD-AS1I3L0S3 204 aa12.55□□□□□ -0.4
TRIM28-212ENST00000597995 PALMO75781 387 aa12.55□□□□□ -0.4
TRIM28-212ENST00000597995 DESP17661 470 aa12.55□□□□□ -0.4
TRIM28-212ENST00000597995 ITGB6P18564 788 aa12.55□□□□□ -0.4
TRIM28-212ENST00000597995 PSMA2P25787 234 aa12.55□□□□□ -0.4
TRIM28-212ENST00000597995 ETV5P41161 510 aa12.55□□□□□ -0.4
TRIM28-212ENST00000597995 UBASH3AP57075 661 aa12.55□□□□□ -0.4
TRIM28-212ENST00000597995 TPI1P60174 286 aa12.55□□□□□ -0.4
TRIM28-212ENST00000597995 B4GALNT1Q00973 533 aa12.55□□□□□ -0.4
TRIM28-212ENST00000597995 SRSF6Q13247 344 aaKnown RBP12.55□□□□□ -0.4
TRIM28-212ENST00000597995 TSR1Q2NL82 804 aaKnown RBP12.55□□□□□ -0.4
TRIM28-212ENST00000597995 TMEM164Q5U3C3 297 aa12.55□□□□□ -0.4
TRIM28-212ENST00000597995 SPECC1LQ69YQ0 1117 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms