RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 INHBCP55103 352 aa13.66□□□□□ -0.22
TRIM28-211ENST00000597968 PIGHQ14442 188 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-211ENST00000597968 LBRQ14739 615 aaKnown RBP13.66□□□□□ -0.22
TRIM28-211ENST00000597968 CA9Q16790 459 aa13.66□□□□□ -0.22
TRIM28-211ENST00000597968 ANO6Q4KMQ2 910 aa13.66□□□□□ -0.22
TRIM28-211ENST00000597968 TAF1BQ53T94 588 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-211ENST00000597968 PPP6R3Q5H9R7 873 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-211ENST00000597968 CERCAMQ5T4B2 595 aa13.66□□□□□ -0.22
TRIM28-211ENST00000597968 PNCKQ6P2M8 343 aa13.66□□□□□ -0.22
TRIM28-211ENST00000597968 CYP4V2Q6ZWL3 525 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-211ENST00000597968 ZSWIM9Q86XI8 627 aa13.66□□□□□ -0.22
TRIM28-211ENST00000597968 KYQ8NBH2 561 aa13.66□□□□□ -0.22
TRIM28-211ENST00000597968 NSMCE1Q8WV22 266 aa13.66□□□□□ -0.22
TRIM28-211ENST00000597968 TEKT4Q8WW24 435 aa13.66□□□□□ -0.22
TRIM28-211ENST00000597968 FUBP1Q96AE4 644 aaKnown RBP13.66□□□□□ -0.22
TRIM28-211ENST00000597968 CCDC74AQ96AQ1 378 aa13.66□□□□□ -0.22
TRIM28-211ENST00000597968 IQCDQ96DY2 449 aa13.66□□□□□ -0.22
TRIM28-211ENST00000597968 KCTD15Q96SI1 283 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-211ENST00000597968 LRRN3Q9H3W5 708 aa13.66□□□□□ -0.22
TRIM28-211ENST00000597968 TRNAU1APQ9NX07 287 aaKnown RBP13.66□□□□□ -0.22
TRIM28-211ENST00000597968 CWC15Q9P013 229 aaKnown RBP13.66□□□□□ -0.22
TRIM28-211ENST00000597968 PCSK1NQ9UHG2 260 aa13.66□□□□□ -0.22
TRIM28-211ENST00000597968 PHTF1Q9UMS5 762 aa13.66□□□□□ -0.22
TRIM28-211ENST00000597968 A0A1B0GTH6 734 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 DFFAO00273 331 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 NVLO15381 856 aaKnown RBP13.65□□□□□ -0.22
TRIM28-211ENST00000597968 CYP2A6P11509 494 aaPredicted RBP13.65□□□□□ -0.22
TRIM28-211ENST00000597968 MYCLP1P12525 358 aaPredicted RBP13.65□□□□□ -0.22
TRIM28-211ENST00000597968 CR2P20023 1033 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 CES1P23141 567 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 CD82P27701 267 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 CDH6P55285 790 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 ZFP36L1Q07352 338 aaKnown RBP13.65□□□□□ -0.22
TRIM28-211ENST00000597968 KLHL30Q0D2K2 578 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 HLTFQ14527 1009 aaKnown RBP eCLIP13.65□□□□□ -0.22
TRIM28-211ENST00000597968 ZNF235Q14590 738 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 C14orf28Q4W4Y0 310 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 ARHGAP40Q5TG30 622 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 PCSK4Q6UW60 755 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 TMCO3Q6UWJ1 677 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 RAB11FIP2Q7L804 512 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 ZNF571Q7Z3V5 609 aaPredicted RBP13.65□□□□□ -0.22
TRIM28-211ENST00000597968 RD3Q7Z3Z2 195 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 TAF8Q7Z7C8 310 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 ZNF605Q86T29 641 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 NLRP8Q86W28 1048 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 NDUFAF2Q8N183 169 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 CBARPQ8N350 705 aaPredicted RBP13.65□□□□□ -0.22
TRIM28-211ENST00000597968 ZNF843Q8N446 348 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 FBXO39Q8N4B4 442 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 NPWQ8N729 165 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 PAF1Q8N7H5 531 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 NIPA2Q8N8Q9 360 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 NETO2Q8NC67 525 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 FAM46DQ8NEK8 389 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 SYN2Q92777 582 aaPredicted RBP13.65□□□□□ -0.22
TRIM28-211ENST00000597968 PDXPQ96GD0 296 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 NAF1Q96HR8 494 aaKnown RBP13.65□□□□□ -0.22
TRIM28-211ENST00000597968 COQ10AQ96MF6 247 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 NUDCD1Q96RS6 583 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 PEBP4Q96S96 227 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 MGME1Q9BQP7 344 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 PHPT1Q9NRX4 125 aaPredicted RBP13.65□□□□□ -0.22
TRIM28-211ENST00000597968 HAUS2Q9NVX0 235 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 GPATCH2LQ9NWQ4 482 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.65□□□□□ -0.22
TRIM28-211ENST00000597968 RCOR3Q9P2K3 495 aaPredicted RBP13.65□□□□□ -0.22
TRIM28-211ENST00000597968 ATXN7L1Q9ULK2 861 aaPredicted RBP13.65□□□□□ -0.22
TRIM28-211ENST00000597968 PPIL1Q9Y3C6 166 aa13.65□□□□□ -0.22
TRIM28-211ENST00000597968 SHROOM3Q8TF72 1996 aa13.64□□□□□ -0.23
TRIM28-211ENST00000597968 A0A1W2PQM1 296 aa13.64□□□□□ -0.23
TRIM28-211ENST00000597968 TMEM202A6NGA9 273 aa13.64□□□□□ -0.23
TRIM28-211ENST00000597968 TMCO5BA8MYB1 307 aa13.64□□□□□ -0.23
TRIM28-211ENST00000597968 RPLP0P05388 317 aaKnown RBP13.64□□□□□ -0.23
TRIM28-211ENST00000597968 PYGLP06737 847 aa13.64□□□□□ -0.23
TRIM28-211ENST00000597968 CELA2BP08218 269 aaPredicted RBP13.64□□□□□ -0.23
TRIM28-211ENST00000597968 SLC10A7Q0GE19 358 aa13.64□□□□□ -0.23
TRIM28-211ENST00000597968 NR1D2Q14995 579 aa13.64□□□□□ -0.23
TRIM28-211ENST00000597968 CAVIN1Q6NZI2 390 aaKnown RBP13.64□□□□□ -0.23
TRIM28-211ENST00000597968 CRTC1Q6UUV9 634 aa13.64□□□□□ -0.23
TRIM28-211ENST00000597968 CCDC81Q6ZN84 652 aa13.64□□□□□ -0.23
TRIM28-211ENST00000597968 POLNQ7Z5Q5 900 aa13.64□□□□□ -0.23
TRIM28-211ENST00000597968 C17orf82Q86X59 251 aaPredicted RBP13.64□□□□□ -0.23
TRIM28-211ENST00000597968 CCNJLQ8IV13 435 aa13.64□□□□□ -0.23
TRIM28-211ENST00000597968 PLA2G15Q8NCC3 412 aa13.64□□□□□ -0.23
TRIM28-211ENST00000597968 GPBAR1Q8TDU6 330 aa13.64□□□□□ -0.23
TRIM28-211ENST00000597968 OR1E3Q8WZA6 343 aa13.64□□□□□ -0.23
TRIM28-211ENST00000597968 TTC9Q92623 222 aa13.64□□□□□ -0.23
TRIM28-211ENST00000597968 ZNF653Q96CK0 615 aa13.64□□□□□ -0.23
TRIM28-211ENST00000597968 SCRN2Q96FV2 425 aa13.64□□□□□ -0.23
TRIM28-211ENST00000597968 CCNL2Q96S94 520 aaPredicted RBP13.64□□□□□ -0.23
TRIM28-211ENST00000597968 CMKLR1Q99788 373 aa13.64□□□□□ -0.23
TRIM28-211ENST00000597968 TEX101Q9BY14 249 aa13.64□□□□□ -0.23
TRIM28-211ENST00000597968 GSDMCQ9BYG8 508 aa13.64□□□□□ -0.23
TRIM28-211ENST00000597968 CPNE5Q9HCH3 593 aa13.64□□□□□ -0.23
TRIM28-211ENST00000597968 FGF22Q9HCT0 170 aa13.64□□□□□ -0.23
TRIM28-211ENST00000597968 AMACRQ9UHK6 382 aa13.64□□□□□ -0.23
TRIM28-211ENST00000597968 DNPEPQ9ULA0 475 aa13.64□□□□□ -0.23
TRIM28-211ENST00000597968 A0A1W2PQJ5 194 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 PRSS38A1L453 326 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms