RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 PSKH2Q96QS6 385 aa24.01■■□□□ 1.43
LSM4-202ENST00000593564 FOXP3Q9BZS1 431 aa24.01■■□□□ 1.43
LSM4-202ENST00000593564 SEPT3Q9UH03 358 aa24.01■■□□□ 1.43
LSM4-202ENST00000593564 TEX33O43247 280 aa24■■□□□ 1.43
LSM4-202ENST00000593564 ZIC2O95409 532 aaPredicted RBP24■■□□□ 1.43
LSM4-202ENST00000593564 PNLIPP16233 465 aa24■■□□□ 1.43
LSM4-202ENST00000593564 GLB1P16278 677 aa24■■□□□ 1.43
LSM4-202ENST00000593564 SCNN1BP51168 640 aa24■■□□□ 1.43
LSM4-202ENST00000593564 RENBPP51606 427 aa24■■□□□ 1.43
LSM4-202ENST00000593564 DPYSQ14117 519 aa24■■□□□ 1.43
LSM4-202ENST00000593564 CCDC81Q6ZN84 652 aa24■■□□□ 1.43
LSM4-202ENST00000593564 TAF8Q7Z7C8 310 aa24■■□□□ 1.43
LSM4-202ENST00000593564 LZTR1Q8N653 840 aa24■■□□□ 1.43
LSM4-202ENST00000593564 PAF1Q8N7H5 531 aa24■■□□□ 1.43
LSM4-202ENST00000593564 FAM46DQ8NEK8 389 aa24■■□□□ 1.43
LSM4-202ENST00000593564 ZNF599Q96NL3 588 aa24■■□□□ 1.43
LSM4-202ENST00000593564 TRIM7Q9C029 511 aa24■■□□□ 1.43
LSM4-202ENST00000593564 WDR26Q9H7D7 661 aa24■■□□□ 1.43
LSM4-202ENST00000593564 MRPL40Q9NQ50 206 aaKnown RBP24■■□□□ 1.43
LSM4-202ENST00000593564 ASH1LQ9NR48 2969 aaKnown RBP24■■□□□ 1.43
LSM4-202ENST00000593564 EIF2AK3Q9NZJ5 1116 aaKnown RBP24■■□□□ 1.43
LSM4-202ENST00000593564 ACSL6Q9UKU0 697 aa24■■□□□ 1.43
LSM4-202ENST00000593564 LRRC53A6NM62 1247 aa23.99■■□□□ 1.43
LSM4-202ENST00000593564 NOBOXO60393 691 aa23.99■■□□□ 1.43
LSM4-202ENST00000593564 GZMAP12544 262 aa23.99■■□□□ 1.43
LSM4-202ENST00000593564 SLC5A2P31639 672 aa23.99■■□□□ 1.43
LSM4-202ENST00000593564 TMCO4Q5TGY1 634 aa23.99■■□□□ 1.43
LSM4-202ENST00000593564 AOPEPQ8N6M6 819 aa23.99■■□□□ 1.43
LSM4-202ENST00000593564 NSMCE3Q96MG7 304 aa23.99■■□□□ 1.43
LSM4-202ENST00000593564 CCNL2Q96S94 520 aaPredicted RBP23.99■■□□□ 1.43
LSM4-202ENST00000593564 SEMA4CQ9C0C4 833 aa23.99■■□□□ 1.43
LSM4-202ENST00000593564 TMEM168Q9H0V1 697 aa23.99■■□□□ 1.43
LSM4-202ENST00000593564 CWC15Q9P013 229 aaKnown RBP23.99■■□□□ 1.43
LSM4-202ENST00000593564 ATXN7L1Q9ULK2 861 aaPredicted RBP23.99■■□□□ 1.43
LSM4-202ENST00000593564 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP23.98■■□□□ 1.43
LSM4-202ENST00000593564 LRCH4O75427 683 aa23.98■■□□□ 1.43
LSM4-202ENST00000593564 HLTFQ14527 1009 aaKnown RBP eCLIP23.98■■□□□ 1.43
LSM4-202ENST00000593564 LBRQ14739 615 aaKnown RBP23.98■■□□□ 1.43
LSM4-202ENST00000593564 ASIC2Q16515 512 aa23.98■■□□□ 1.43
LSM4-202ENST00000593564 ZSCAN23Q3MJ62 389 aa23.98■■□□□ 1.43
LSM4-202ENST00000593564 C14orf28Q4W4Y0 310 aa23.98■■□□□ 1.43
LSM4-202ENST00000593564 PNCKQ6P2M8 343 aa23.98■■□□□ 1.43
LSM4-202ENST00000593564 Q8N9G6 341 aaPredicted RBP23.98■■□□□ 1.43
LSM4-202ENST00000593564 LGR4Q9BXB1 951 aa23.98■■□□□ 1.43
LSM4-202ENST00000593564 HAUS4Q9H6D7 363 aa23.98■■□□□ 1.43
LSM4-202ENST00000593564 ZWILCHQ9H900 591 aa23.98■■□□□ 1.43
LSM4-202ENST00000593564 RTN4Q9NQC3 1192 aaKnown RBP23.98■■□□□ 1.43
LSM4-202ENST00000593564 B4GALT6Q9UBX8 382 aa23.98■■□□□ 1.43
LSM4-202ENST00000593564 CNOT8Q9UFF9 292 aaKnown RBP23.98■■□□□ 1.43
LSM4-202ENST00000593564 ANKRD36A6QL64 1941 aa23.98■■□□□ 1.43
LSM4-202ENST00000593564 PDE2AO00408 941 aaPredicted RBP23.97■■□□□ 1.43
LSM4-202ENST00000593564 HTRA2O43464 458 aaPredicted RBP23.97■■□□□ 1.43
LSM4-202ENST00000593564 FTLP02792 175 aaPredicted RBP23.97■■□□□ 1.43
LSM4-202ENST00000593564 HGFP14210 728 aa23.97■■□□□ 1.43
LSM4-202ENST00000593564 ZFP36L1Q07352 338 aaKnown RBP23.97■■□□□ 1.43
LSM4-202ENST00000593564 SLC10A7Q0GE19 358 aa23.97■■□□□ 1.43
LSM4-202ENST00000593564 LY6DQ14210 128 aa23.97■■□□□ 1.43
LSM4-202ENST00000593564 ACOX1Q15067 660 aa23.97■■□□□ 1.43
LSM4-202ENST00000593564 TSR1Q2NL82 804 aaKnown RBP23.97■■□□□ 1.43
LSM4-202ENST00000593564 KIAA1614Q5VZ46 1190 aa23.97■■□□□ 1.43
LSM4-202ENST00000593564 ZNF571Q7Z3V5 609 aaPredicted RBP23.97■■□□□ 1.43
LSM4-202ENST00000593564 SPRED1Q7Z699 444 aa23.97■■□□□ 1.43
LSM4-202ENST00000593564 JAMLQ86YT9 394 aa23.97■■□□□ 1.43
LSM4-202ENST00000593564 TP53INP2Q8IXH6 220 aa23.97■■□□□ 1.43
LSM4-202ENST00000593564 PELI3Q8N2H9 469 aa23.97■■□□□ 1.43
LSM4-202ENST00000593564 TMEM159Q96B96 161 aa23.97■■□□□ 1.43
LSM4-202ENST00000593564 COQ10AQ96MF6 247 aa23.97■■□□□ 1.43
LSM4-202ENST00000593564 CYP4F12Q9HCS2 524 aa23.97■■□□□ 1.43
LSM4-202ENST00000593564 AIPL1Q9NZN9 384 aa23.97■■□□□ 1.43
LSM4-202ENST00000593564 LOXL2Q9Y4K0 774 aa23.97■■□□□ 1.43
LSM4-202ENST00000593564 SCINQ9Y6U3 715 aa23.97■■□□□ 1.43
LSM4-202ENST00000593564 RNF215Q9Y6U7 377 aa23.97■■□□□ 1.43
LSM4-202ENST00000593564 PIEZO2Q9H5I5 2752 aa23.97■■□□□ 1.43
LSM4-202ENST00000593564 UNC13CQ8NB66 2214 aa23.96■■□□□ 1.43
LSM4-202ENST00000593564 A0A1W2PQ67 120 aa23.96■■□□□ 1.43
LSM4-202ENST00000593564 PRSS38A1L453 326 aa23.96■■□□□ 1.43
LSM4-202ENST00000593564 A8MX80 341 aa23.96■■□□□ 1.43
LSM4-202ENST00000593564 B4DGG1 531 aa23.96■■□□□ 1.43
LSM4-202ENST00000593564 NUDT21O43809 227 aaKnown RBP23.96■■□□□ 1.43
LSM4-202ENST00000593564 JMJD7P0C870 316 aa23.96■■□□□ 1.43
LSM4-202ENST00000593564 PCK1P35558 622 aa23.96■■□□□ 1.43
LSM4-202ENST00000593564 HSPA9P38646 679 aaKnown RBP23.96■■□□□ 1.43
LSM4-202ENST00000593564 PRKCIP41743 596 aa23.96■■□□□ 1.43
LSM4-202ENST00000593564 ZNF235Q14590 738 aa23.96■■□□□ 1.43
LSM4-202ENST00000593564 CCDC183Q5T5S1 534 aa23.96■■□□□ 1.43
LSM4-202ENST00000593564 SPECC1LQ69YQ0 1117 aa23.96■■□□□ 1.43
LSM4-202ENST00000593564 SFTPA2Q8IWL1 248 aa23.96■■□□□ 1.43
LSM4-202ENST00000593564 CCL4L1Q8NHW4 92 aa23.96■■□□□ 1.43
LSM4-202ENST00000593564 ZNF653Q96CK0 615 aa23.96■■□□□ 1.43
LSM4-202ENST00000593564 NUS1Q96E22 293 aa23.96■■□□□ 1.43
LSM4-202ENST00000593564 DPEP2Q9H4A9 486 aa23.96■■□□□ 1.43
LSM4-202ENST00000593564 LRIT1Q9P2V4 623 aa23.96■■□□□ 1.43
LSM4-202ENST00000593564 PISDQ9UG56 409 aa23.96■■□□□ 1.43
LSM4-202ENST00000593564 H3BRJ5 948 aa23.95■■□□□ 1.42
LSM4-202ENST00000593564 DDX3XO00571 662 aaKnown RBP eCLIP23.95■■□□□ 1.421e-52■■■■■ 70.2
LSM4-202ENST00000593564 NVLO15381 856 aaKnown RBP23.95■■□□□ 1.42
LSM4-202ENST00000593564 EFSO43281 561 aa23.95■■□□□ 1.42
LSM4-202ENST00000593564 SOCS5O75159 536 aa23.95■■□□□ 1.42
LSM4-202ENST00000593564 PEX11BO96011 259 aa23.95■■□□□ 1.42
LSM4-202ENST00000593564 MYCLP1P12525 358 aaPredicted RBP23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms