RNA–Protein interactions for RNA: ENST00000583328.5

TOP3A-215, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-215ENST00000583328 FAM71AQ8IYT1 594 aa12.35□□□□□ -0.43
TOP3A-215ENST00000583328 EMC1Q8N766 993 aa12.35□□□□□ -0.43
TOP3A-215ENST00000583328 ZDHHC1Q8WTX9 485 aa12.35□□□□□ -0.43
TOP3A-215ENST00000583328 SLC45A3Q96JT2 553 aa12.35□□□□□ -0.43
TOP3A-215ENST00000583328 EXOC2Q96KP1 924 aa12.35□□□□□ -0.43
TOP3A-215ENST00000583328 ASPSCR1Q9BZE9 553 aa12.35□□□□□ -0.43
TOP3A-215ENST00000583328 KLC2Q9H0B6 622 aa12.35□□□□□ -0.43
TOP3A-215ENST00000583328 RAB6CQ9H0N0 254 aa12.35□□□□□ -0.43
TOP3A-215ENST00000583328 SUDS3Q9H7L9 328 aaPredicted RBP12.35□□□□□ -0.43
TOP3A-215ENST00000583328 SPATS2LQ9NUQ6 558 aaKnown RBP12.35□□□□□ -0.43
TOP3A-215ENST00000583328 ATP8A1Q9Y2Q0 1164 aa12.35□□□□□ -0.43
TOP3A-215ENST00000583328 ZFC3H1O60293 1989 aaKnown RBP12.34□□□□□ -0.43
TOP3A-215ENST00000583328 SCN8AQ9UQD0 1980 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 FLNCQ14315 2725 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 TSPAN11A1L157 253 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 GTPBP10A4D1E9 387 aaKnown RBP12.34□□□□□ -0.43
TOP3A-215ENST00000583328 CFAP69A5D8W1 941 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 PDE2AO00408 941 aaPredicted RBP12.34□□□□□ -0.43
TOP3A-215ENST00000583328 TEX33O43247 280 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 FGF1P05230 155 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 HOXC4P09017 264 aaPredicted RBP12.34□□□□□ -0.43
TOP3A-215ENST00000583328 CYP11B1P15538 503 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 MPSTP25325 297 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 MMP12P39900 470 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 STAT1P42224 750 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 ZNF165P49910 485 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 LIMK2P53671 638 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 TSR1Q2NL82 804 aaKnown RBP12.34□□□□□ -0.43
TOP3A-215ENST00000583328 C15orf59Q2T9L4 293 aaPredicted RBP12.34□□□□□ -0.43
TOP3A-215ENST00000583328 DCAF12Q5T6F0 453 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 NKAIN2Q5VXU1 208 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 BRAT1Q6PJG6 821 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 ARCQ7LC44 396 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 PHLDB2Q86SQ0 1253 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 ATCAYQ86WG3 371 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 NRSN1Q8IZ57 195 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 AOPEPQ8N6M6 819 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 OR4D9Q8NGE8 314 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 APOBEC4Q8WW27 367 aaKnown RBP12.34□□□□□ -0.43
TOP3A-215ENST00000583328 RXFP2Q8WXD0 754 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 CPA5Q8WXQ8 436 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 KIAA1143Q96AT1 154 aaPredicted RBP12.34□□□□□ -0.43
TOP3A-215ENST00000583328 ABHD17AQ96GS6 310 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 ZNF641Q96N77 438 aaPredicted RBP12.34□□□□□ -0.43
TOP3A-215ENST00000583328 EFHD1Q9BUP0 239 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 DDA1Q9BW61 102 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 LGR4Q9BXB1 951 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 GSDMCQ9BYG8 508 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 GPN2Q9H9Y4 310 aaPredicted RBP12.34□□□□□ -0.43
TOP3A-215ENST00000583328 SIX2Q9NPC8 291 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 METTL5Q9NRN9 209 aaKnown RBP12.34□□□□□ -0.43
TOP3A-215ENST00000583328 LHX3Q9UBR4 397 aa12.34□□□□□ -0.43
TOP3A-215ENST00000583328 PRSS38A1L453 326 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 EFCAB7A8K855 629 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 SMTNL1A8MU46 457 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 RASA4BC9J798 803 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 MTSS1O43312 755 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 RASA4O43374 803 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 DUX1O43812 170 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 BUB1BO60566 1050 aaPredicted RBP12.33□□□□□ -0.44
TOP3A-215ENST00000583328 ECEL1O95672 775 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 ELFN1P0C7U0 828 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 CCNB1P14635 433 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 EEF1GP26641 437 aaKnown RBP12.33□□□□□ -0.44
TOP3A-215ENST00000583328 SDC4P31431 198 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 TRIM23P36406 574 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 GPR3P46089 330 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 MTIF2P46199 727 aaKnown RBP12.33□□□□□ -0.44
TOP3A-215ENST00000583328 YBEYP58557 167 aaPredicted RBP12.33□□□□□ -0.44
TOP3A-215ENST00000583328 ILF3Q12906 894 aaKnown RBP eCLIP12.33□□□□□ -0.447e-6■■■■□ 19.9
TOP3A-215ENST00000583328 RAPGEF1Q13905 1077 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 SEPT6Q14141 434 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 NR1D2Q14995 579 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 DEFB109BQ30KR1 87 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 CCDC14Q49A88 953 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 LACTB2Q53H82 288 aaPredicted RBP12.33□□□□□ -0.44
TOP3A-215ENST00000583328 CDKAL1Q5VV42 579 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 HIST2H2BCQ6DN03 193 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 ZNF438Q7Z4V0 828 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 C17orf82Q86X59 251 aaPredicted RBP12.33□□□□□ -0.44
TOP3A-215ENST00000583328 FAM129CQ86XR2 697 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 CAMK1DQ8IU85 385 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 PAF1Q8N7H5 531 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 MIB2Q96AX9 1013 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 NOL6Q9H6R4 1146 aaKnown RBP12.33□□□□□ -0.44
TOP3A-215ENST00000583328 WDR26Q9H7D7 661 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 CARS2Q9HA77 564 aaKnown RBP12.33□□□□□ -0.44
TOP3A-215ENST00000583328 SAMSN1Q9NSI8 373 aaKnown RBP12.33□□□□□ -0.44
TOP3A-215ENST00000583328 OCIAD1Q9NX40 245 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 TAAR2Q9P1P5 351 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 UBA2Q9UBT2 640 aaPredicted RBP12.33□□□□□ -0.44
TOP3A-215ENST00000583328 NEU3Q9UQ49 428 aa12.33□□□□□ -0.44
TOP3A-215ENST00000583328 USP9YO00507 2555 aaPredicted RBP12.32□□□□□ -0.44
TOP3A-215ENST00000583328 PRR19A6NJB7 356 aa12.32□□□□□ -0.44
TOP3A-215ENST00000583328 B4E171 279 aa12.32□□□□□ -0.44
TOP3A-215ENST00000583328 LSM8O95777 96 aaKnown RBP12.32□□□□□ -0.44
TOP3A-215ENST00000583328 MAP4P27816 1152 aaKnown RBP12.32□□□□□ -0.44
TOP3A-215ENST00000583328 EPHB2P29323 1055 aa12.32□□□□□ -0.44
TOP3A-215ENST00000583328 TSPAN7P41732 249 aa12.32□□□□□ -0.44
TOP3A-215ENST00000583328 PPM1FP49593 454 aaPredicted RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms