RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 SEC62Q99442 399 aaKnown RBP6.4□□□□□ -1.38
SS18-214ENST00000580003 AGXT2Q9BYV1 514 aa6.4□□□□□ -1.38
SS18-214ENST00000580003 DDX31Q9H8H2 851 aaKnown RBP6.4□□□□□ -1.38
SS18-214ENST00000580003 C17orf75Q9HAS0 396 aa6.4□□□□□ -1.38
SS18-214ENST00000580003 PREBQ9HCU5 417 aa6.4□□□□□ -1.38
SS18-214ENST00000580003 NOX4Q9NPH5 578 aa6.4□□□□□ -1.38
SS18-214ENST00000580003 CNGB3Q9NQW8 809 aa6.4□□□□□ -1.38
SS18-214ENST00000580003 STON1Q9Y6Q2 735 aa6.4□□□□□ -1.38
SS18-214ENST00000580003 UTYO14607 1347 aa6.4□□□□□ -1.39
SS18-214ENST00000580003 A0A1W2PQM1 296 aa6.39□□□□□ -1.39
SS18-214ENST00000580003 PRR23D1E9PI22 279 aaPredicted RBP6.39□□□□□ -1.39
SS18-214ENST00000580003 NDUFS7O75251 213 aa6.39□□□□□ -1.39
SS18-214ENST00000580003 PRR23D2P0DMB1 279 aaPredicted RBP6.39□□□□□ -1.39
SS18-214ENST00000580003 RAD23BP54727 409 aa6.39□□□□□ -1.39
SS18-214ENST00000580003 SORDQ00796 357 aa6.39□□□□□ -1.39
SS18-214ENST00000580003 EEF1A2Q05639 463 aaKnown RBP6.39□□□□□ -1.39
SS18-214ENST00000580003 ATP13A5Q4VNC0 1218 aa6.39□□□□□ -1.39
SS18-214ENST00000580003 INO80CQ6PI98 192 aaPredicted RBP6.39□□□□□ -1.39
SS18-214ENST00000580003 IL17REQ8NFR9 667 aa6.39□□□□□ -1.39
SS18-214ENST00000580003 PABPC5Q96DU9 382 aaKnown RBP6.39□□□□□ -1.39
SS18-214ENST00000580003 BICD1Q96G01 975 aa6.39□□□□□ -1.39
SS18-214ENST00000580003 LMLNQ96KR4 655 aa6.39□□□□□ -1.39
SS18-214ENST00000580003 CSF3RQ99062 836 aa6.39□□□□□ -1.39
SS18-214ENST00000580003 GLIS2Q9BZE0 524 aaPredicted RBP6.39□□□□□ -1.39
SS18-214ENST00000580003 RETREG1Q9H6L5 497 aa6.39□□□□□ -1.39
SS18-214ENST00000580003 GAREM1Q9H706 876 aa6.39□□□□□ -1.39
SS18-214ENST00000580003 PRKRIP1Q9H875 184 aaPredicted RBP6.39□□□□□ -1.39
SS18-214ENST00000580003 BRF2Q9HAW0 419 aa6.39□□□□□ -1.39
SS18-214ENST00000580003 MKKSQ9NPJ1 570 aaPredicted RBP6.39□□□□□ -1.39
SS18-214ENST00000580003 GPR108Q9NPR9 543 aa6.39□□□□□ -1.39
SS18-214ENST00000580003 TAS2R10Q9NYW0 307 aa6.39□□□□□ -1.39
SS18-214ENST00000580003 SMARCAL1Q9NZC9 954 aa6.39□□□□□ -1.39
SS18-214ENST00000580003 ERVK-11Q9UQG0 969 aa6.39□□□□□ -1.39
SS18-214ENST00000580003 NAALADL1Q9UQQ1 740 aa6.39□□□□□ -1.39
SS18-214ENST00000580003 AAR2Q9Y312 384 aaKnown RBP6.39□□□□□ -1.39
SS18-214ENST00000580003 SAA2-SAA4A0A096LPE2 208 aa6.38□□□□□ -1.39
SS18-214ENST00000580003 CCDC189A1A4V9 331 aa6.38□□□□□ -1.39
SS18-214ENST00000580003 MAGEA13PA6NCF6 341 aa6.38□□□□□ -1.39
SS18-214ENST00000580003 TIPRLO75663 272 aa6.38□□□□□ -1.39
SS18-214ENST00000580003 SEC31AO94979 1220 aaKnown RBP6.38□□□□□ -1.39
SS18-214ENST00000580003 EPHA8P29322 1005 aaPredicted RBP6.38□□□□□ -1.39
SS18-214ENST00000580003 HARS2P49590 506 aaKnown RBP6.38□□□□□ -1.39
SS18-214ENST00000580003 OASLQ15646 514 aaKnown RBP6.38□□□□□ -1.39
SS18-214ENST00000580003 INTS11Q5TA45 600 aaKnown RBP6.38□□□□□ -1.39
SS18-214ENST00000580003 FAM122CQ6P4D5 195 aa6.38□□□□□ -1.39
SS18-214ENST00000580003 DLK2Q6UY11 383 aa6.38□□□□□ -1.39
SS18-214ENST00000580003 GSTA5Q7RTV2 222 aa6.38□□□□□ -1.39
SS18-214ENST00000580003 RBMXL3Q8N7X1 1067 aaKnown RBP6.38□□□□□ -1.39
SS18-214ENST00000580003 C3orf30Q96M34 536 aa6.38□□□□□ -1.39
SS18-214ENST00000580003 PDCL3Q9H2J4 239 aa6.38□□□□□ -1.39
SS18-214ENST00000580003 NDST4Q9H3R1 872 aa6.38□□□□□ -1.39
SS18-214ENST00000580003 ESRP2Q9H6T0 727 aaKnown RBP6.38□□□□□ -1.39
SS18-214ENST00000580003 PLSCR4Q9NRQ2 329 aa6.38□□□□□ -1.39
SS18-214ENST00000580003 SOCS6O14544 535 aa6.37□□□□□ -1.39
SS18-214ENST00000580003 CLGNO14967 610 aa6.37□□□□□ -1.39
SS18-214ENST00000580003 CLDN14O95500 239 aa6.37□□□□□ -1.39
SS18-214ENST00000580003 PMS2P2O95744 297 aa6.37□□□□□ -1.39
SS18-214ENST00000580003 SNRNP70P08621 437 aaKnown RBP6.37□□□□□ -1.39
SS18-214ENST00000580003 G6PDP11413 515 aa6.37□□□□□ -1.39
SS18-214ENST00000580003 SRCP12931 536 aa6.37□□□□□ -1.39
SS18-214ENST00000580003 DDX5P17844 614 aaKnown RBP6.37□□□□□ -1.39
SS18-214ENST00000580003 CDAP32320 146 aa6.37□□□□□ -1.39
SS18-214ENST00000580003 EIF2S3P41091 472 aaKnown RBP6.37□□□□□ -1.39
SS18-214ENST00000580003 POU3F1Q03052 451 aaPredicted RBP6.37□□□□□ -1.39
SS18-214ENST00000580003 NAE1Q13564 534 aa6.37□□□□□ -1.39
SS18-214ENST00000580003 TNFAIP1Q13829 316 aa6.37□□□□□ -1.39
SS18-214ENST00000580003 CTF1Q16619 201 aa6.37□□□□□ -1.39
SS18-214ENST00000580003 SLC45A4Q5BKX6 768 aa6.37□□□□□ -1.39
SS18-214ENST00000580003 ANKRD54Q6NXT1 300 aa6.37□□□□□ -1.39
SS18-214ENST00000580003 METTL2BQ6P1Q9 378 aaKnown RBP6.37□□□□□ -1.39
SS18-214ENST00000580003 WDR73Q6P4I2 378 aa6.37□□□□□ -1.39
SS18-214ENST00000580003 KRBA2Q6ZNG9 492 aa6.37□□□□□ -1.39
SS18-214ENST00000580003 TAOK1Q7L7X3 1001 aa6.37□□□□□ -1.39
SS18-214ENST00000580003 NAXEQ8NCW5 288 aa6.37□□□□□ -1.39
SS18-214ENST00000580003 METTL2AQ96IZ6 378 aaKnown RBP6.37□□□□□ -1.39
SS18-214ENST00000580003 NR1H4Q96RI1 486 aaPredicted RBP6.37□□□□□ -1.39
SS18-214ENST00000580003 HAUS8Q9BT25 410 aa6.37□□□□□ -1.39
SS18-214ENST00000580003 TKTL2Q9H0I9 626 aa6.37□□□□□ -1.39
SS18-214ENST00000580003 PCDHB16Q9NRJ7 776 aa6.37□□□□□ -1.39
SS18-214ENST00000580003 SIX4Q9UIU6 781 aa6.37□□□□□ -1.39
SS18-214ENST00000580003 TMEM98Q9Y2Y6 226 aa6.37□□□□□ -1.39
SS18-214ENST00000580003 A0A1B0GUV1 79 aa6.36□□□□□ -1.39
SS18-214ENST00000580003 IFNL4K9M1U5 179 aa6.36□□□□□ -1.39
SS18-214ENST00000580003 SNAP23O00161 211 aa6.36□□□□□ -1.39
SS18-214ENST00000580003 PLRG1O43660 514 aaKnown RBP6.36□□□□□ -1.39
SS18-214ENST00000580003 KDM4BO94953 1096 aa6.36□□□□□ -1.39
SS18-214ENST00000580003 AFPP02771 609 aaKnown RBP6.36□□□□□ -1.39
SS18-214ENST00000580003 CYC1P08574 325 aa6.36□□□□□ -1.39
SS18-214ENST00000580003 METAP2P50579 478 aaKnown RBP eCLIP6.36□□□□□ -1.39
SS18-214ENST00000580003 CASP6P55212 293 aa6.36□□□□□ -1.39
SS18-214ENST00000580003 ERVFC1-1P60608 527 aa6.36□□□□□ -1.39
SS18-214ENST00000580003 C2orf68Q2NKX9 166 aa6.36□□□□□ -1.39
SS18-214ENST00000580003 SETMARQ53H47 684 aaPredicted RBP6.36□□□□□ -1.39
SS18-214ENST00000580003 PAPPA-AS1Q5QFB9 102 aa6.36□□□□□ -1.39
SS18-214ENST00000580003 ATF7IPQ6VMQ6 1270 aa6.36□□□□□ -1.39
SS18-214ENST00000580003 SLC36A4Q6YBV0 504 aa6.36□□□□□ -1.39
SS18-214ENST00000580003 CCNI2Q6ZMN8 369 aaPredicted RBP6.36□□□□□ -1.39
SS18-214ENST00000580003 SLC41A2Q96JW4 573 aa6.36□□□□□ -1.39
SS18-214ENST00000580003 SH3GL2Q99962 352 aa6.36□□□□□ -1.39
SS18-214ENST00000580003 HINT3Q9NQE9 182 aaKnown RBP6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms