RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 A0A1W2PQF6 199 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 FAM159BA6NKW6 160 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 SYF2O95926 243 aaKnown RBP25.16■■□□□ 1.62
SHMT1-207ENST00000580002 LHCGRP22888 699 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 PSMD8P48556 350 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 ZNF140P52738 457 aaPredicted RBP25.16■■□□□ 1.62
SHMT1-207ENST00000580002 CAMK2GQ13555 558 aaPredicted RBP25.16■■□□□ 1.62
SHMT1-207ENST00000580002 TAF1AQ15573 450 aaPredicted RBP25.16■■□□□ 1.62
SHMT1-207ENST00000580002 SKIDA1Q1XH10 827 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 HSP90AA5PQ58FG0 334 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 RFLNAQ6ZTI6 216 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 TTC7BQ86TV6 843 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 CYP4X1Q8N118 509 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 ZNF687Q8N1G0 1237 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 PPM1NQ8N819 430 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 TMIEQ8NEW7 156 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 HDAC10Q969S8 669 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 SCRN2Q96FV2 425 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 CERS2Q96G23 380 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 B4GALT6Q9UBX8 382 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 ITM2BQ9Y287 266 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 PSAT1Q9Y617 370 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 TSPAN11A1L157 253 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 CAPN8A6NHC0 703 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 PRNPP04156 253 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 GSTA2P09210 222 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 PRSS56P0CW18 603 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 STAT4Q14765 748 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 KRT71Q3SY84 523 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 CTAGE3PQ8IX95 158 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 PTCD2Q8WV60 388 aaKnown RBP25.16■■□□□ 1.62
SHMT1-207ENST00000580002 GABRG3Q99928 467 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 PCDH12Q9NPG4 1184 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 ARHGEF3Q9NR81 526 aa25.16■■□□□ 1.62
SHMT1-207ENST00000580002 SPINT1O43278 529 aa25.15■■□□□ 1.62
SHMT1-207ENST00000580002 SPAG6O75602 509 aa25.15■■□□□ 1.62
SHMT1-207ENST00000580002 COPAP53621 1224 aa25.15■■□□□ 1.62
SHMT1-207ENST00000580002 LRIG1Q96JA1 1093 aa25.15■■□□□ 1.62
SHMT1-207ENST00000580002 MCCC1Q96RQ3 725 aaPredicted RBP25.15■■□□□ 1.62
SHMT1-207ENST00000580002 OSBPL1AQ9BXW6 950 aa25.15■■□□□ 1.62
SHMT1-207ENST00000580002 GPR63Q9BZJ6 419 aa25.15■■□□□ 1.62
SHMT1-207ENST00000580002 MKRN2Q9H000 416 aaKnown RBP25.15■■□□□ 1.62
SHMT1-207ENST00000580002 CD248Q9HCU0 757 aa25.15■■□□□ 1.62
SHMT1-207ENST00000580002 IARS2Q9NSE4 1012 aaKnown RBP25.15■■□□□ 1.62
SHMT1-207ENST00000580002 TBK1Q9UHD2 729 aa25.15■■□□□ 1.62
SHMT1-207ENST00000580002 FNDC3AQ9Y2H6 1198 aaKnown RBP25.15■■□□□ 1.62
SHMT1-207ENST00000580002 C1orf232A0A0U1RR37 186 aa25.14■■□□□ 1.62
SHMT1-207ENST00000580002 H3BQF6 201 aa25.14■■□□□ 1.62
SHMT1-207ENST00000580002 RASGRF2O14827 1237 aa25.14■■□□□ 1.62
SHMT1-207ENST00000580002 TARSP26639 723 aaKnown RBP25.14■■□□□ 1.62
SHMT1-207ENST00000580002 STX2P32856 288 aa25.14■■□□□ 1.62
SHMT1-207ENST00000580002 SATB1Q01826 763 aa25.14■■□□□ 1.62
SHMT1-207ENST00000580002 BRAT1Q6PJG6 821 aa25.14■■□□□ 1.62
SHMT1-207ENST00000580002 TMEM92Q6UXU6 159 aa25.14■■□□□ 1.62
SHMT1-207ENST00000580002 KCNMB4Q86W47 210 aa25.14■■□□□ 1.62
SHMT1-207ENST00000580002 NECAB3Q96P71 396 aaPredicted RBP25.14■■□□□ 1.62
SHMT1-207ENST00000580002 CYTH2Q99418 400 aa25.14■■□□□ 1.62
SHMT1-207ENST00000580002 FOXQ1Q9C009 403 aa25.14■■□□□ 1.62
SHMT1-207ENST00000580002 CENPHQ9H3R5 247 aa25.14■■□□□ 1.62
SHMT1-207ENST00000580002 C2orf42Q9NWW7 574 aa25.14■■□□□ 1.62
SHMT1-207ENST00000580002 VPS18Q9P253 973 aa25.14■■□□□ 1.62
SHMT1-207ENST00000580002 SYNCRIPO60506 623 aaKnown RBP25.13■■□□□ 1.61
SHMT1-207ENST00000580002 CRTAMO95727 393 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 CHRNB1P11230 501 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 HOXB2P14652 356 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 PTSQ03393 145 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 TEDDM1Q5T9Z0 273 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 ZNF852Q6ZMS4 543 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 RASSF3Q86WH2 238 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 SPOCK2Q92563 424 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 PAFAH2Q99487 392 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 SH3GL2Q99962 352 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 RSPH9Q9H1X1 276 aaPredicted RBP25.13■■□□□ 1.61
SHMT1-207ENST00000580002 IL17CQ9P0M4 197 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 DKK3Q9UBP4 350 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 MUTYHQ9UIF7 546 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 CCDC162PA2VCL2 907 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 UPK3BL1B0FP48 263 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 UPK3BL2E5RIL1 263 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 MID1O15344 667 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 PAPSS2O95340 614 aaPredicted RBP25.13■■□□□ 1.61
SHMT1-207ENST00000580002 LPOP22079 712 aaPredicted RBP25.13■■□□□ 1.61
SHMT1-207ENST00000580002 ABCG1P45844 678 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 EIF3BP55884 814 aaKnown RBP25.13■■□□□ 1.61
SHMT1-207ENST00000580002 MRPS21P82921 87 aaKnown RBP25.13■■□□□ 1.61
SHMT1-207ENST00000580002 MGAT5Q09328 741 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 FZD5Q13467 585 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 LRRC66Q68CR7 880 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 PTAR1Q7Z6K3 402 aaPredicted RBP25.13■■□□□ 1.61
SHMT1-207ENST00000580002 LDB1Q86U70 411 aaPredicted RBP25.13■■□□□ 1.61
SHMT1-207ENST00000580002 DENND6AQ8IWF6 608 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 STYXQ8WUJ0 223 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 DCAKDQ8WVC6 231 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 CDKN2AIPNLQ96HQ2 116 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 RUFY1Q96T51 708 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 TMEM109Q9BVC6 243 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 ZFYVE1Q9HBF4 777 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 NLE1Q9NVX2 485 aaPredicted RBP25.13■■□□□ 1.61
SHMT1-207ENST00000580002 SERGEFQ9UGK8 458 aa25.13■■□□□ 1.61
SHMT1-207ENST00000580002 FKBPLQ9UIM3 349 aa25.13■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms