RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 NPIPB15A6NHN6 443 aaPredicted RBP23.95■■□□□ 1.42
SHMT1-206ENST00000579558 K7ESM1 405 aa23.95■■□□□ 1.42
SHMT1-206ENST00000579558 PPP1R12AO14974 1030 aaPredicted RBP23.95■■□□□ 1.42
SHMT1-206ENST00000579558 FZD6O60353 706 aa23.95■■□□□ 1.42
SHMT1-206ENST00000579558 PROS1P07225 676 aa23.95■■□□□ 1.42
SHMT1-206ENST00000579558 PDHA1P08559 390 aa23.95■■□□□ 1.42
SHMT1-206ENST00000579558 CDK4P11802 303 aa23.95■■□□□ 1.42
SHMT1-206ENST00000579558 KRT10P13645 584 aa23.95■■□□□ 1.42
SHMT1-206ENST00000579558 CTPS1P17812 591 aa23.95■■□□□ 1.42
SHMT1-206ENST00000579558 CA4P22748 312 aa23.95■■□□□ 1.42
SHMT1-206ENST00000579558 CDKN2BP42772 138 aa23.95■■□□□ 1.42
SHMT1-206ENST00000579558 IFI35P80217 286 aaPredicted RBP23.95■■□□□ 1.42
SHMT1-206ENST00000579558 PPARDQ03181 441 aa23.95■■□□□ 1.42
SHMT1-206ENST00000579558 NIPAL4Q0D2K0 466 aa23.95■■□□□ 1.42
SHMT1-206ENST00000579558 ST3GAL2Q16842 350 aa23.95■■□□□ 1.42
SHMT1-206ENST00000579558 CCNI2Q6ZMN8 369 aaPredicted RBP23.95■■□□□ 1.42
SHMT1-206ENST00000579558 SPOCD1Q6ZMY3 1216 aa23.95■■□□□ 1.42
SHMT1-206ENST00000579558 DAAM2Q86T65 1068 aa23.95■■□□□ 1.42
SHMT1-206ENST00000579558 NDUFAF2Q8N183 169 aa23.95■■□□□ 1.42
SHMT1-206ENST00000579558 ARRDC2Q8TBH0 407 aa23.95■■□□□ 1.42
SHMT1-206ENST00000579558 SCRN2Q96FV2 425 aa23.95■■□□□ 1.42
SHMT1-206ENST00000579558 OLFM3Q96PB7 478 aa23.95■■□□□ 1.42
SHMT1-206ENST00000579558 MCCC1Q96RQ3 725 aaPredicted RBP23.95■■□□□ 1.42
SHMT1-206ENST00000579558 SLC13A1Q9BZW2 595 aa23.95■■□□□ 1.42
SHMT1-206ENST00000579558 SALL4Q9UJQ4 1053 aa23.95■■□□□ 1.42
SHMT1-206ENST00000579558 ALPIP09923 528 aa23.94■■□□□ 1.42
SHMT1-206ENST00000579558 LHCGRP22888 699 aa23.94■■□□□ 1.42
SHMT1-206ENST00000579558 ACP1P24666 158 aa23.94■■□□□ 1.42
SHMT1-206ENST00000579558 CDC25BP30305 580 aa23.94■■□□□ 1.42
SHMT1-206ENST00000579558 EPHB1P54762 984 aa23.94■■□□□ 1.42
SHMT1-206ENST00000579558 ZBTB17Q13105 803 aa23.94■■□□□ 1.42
SHMT1-206ENST00000579558 ILKQ13418 452 aa23.94■■□□□ 1.42
SHMT1-206ENST00000579558 ARHGEF7Q14155 803 aa23.94■■□□□ 1.42
SHMT1-206ENST00000579558 TFDP2Q14188 446 aa23.94■■□□□ 1.42
SHMT1-206ENST00000579558 IHHQ14623 411 aa23.94■■□□□ 1.42
SHMT1-206ENST00000579558 PTPRRQ15256 657 aa23.94■■□□□ 1.42
SHMT1-206ENST00000579558 SMAD1Q15797 465 aaKnown RBP23.94■■□□□ 1.42
SHMT1-206ENST00000579558 TAZQ16635 292 aa23.94■■□□□ 1.42
SHMT1-206ENST00000579558 PRRT3Q5FWE3 981 aa23.94■■□□□ 1.42
SHMT1-206ENST00000579558 KAZNQ674X7 775 aa23.94■■□□□ 1.42
SHMT1-206ENST00000579558 ENPP7Q6UWV6 458 aa23.94■■□□□ 1.42
SHMT1-206ENST00000579558 ATL2Q8NHH9 583 aa23.94■■□□□ 1.42
SHMT1-206ENST00000579558 NUS1Q96E22 293 aa23.94■■□□□ 1.42
SHMT1-206ENST00000579558 IL12RB2Q99665 862 aa23.94■■□□□ 1.42
SHMT1-206ENST00000579558 BAG1Q99933 345 aaPredicted RBP23.94■■□□□ 1.42
SHMT1-206ENST00000579558 TDRD1Q9BXT4 1180 aaKnown RBP23.94■■□□□ 1.42
SHMT1-206ENST00000579558 CHKBQ9Y259 395 aa23.94■■□□□ 1.42
SHMT1-206ENST00000579558 REXO2Q9Y3B8 237 aaKnown RBP23.94■■□□□ 1.42
SHMT1-206ENST00000579558 PPIL1Q9Y3C6 166 aa23.94■■□□□ 1.42
SHMT1-206ENST00000579558 PLXNB3Q9ULL4 1909 aa23.94■■□□□ 1.42
SHMT1-206ENST00000579558 KRT37O76014 449 aa23.93■■□□□ 1.42
SHMT1-206ENST00000579558 MARCKSL1P49006 195 aa23.93■■□□□ 1.42
SHMT1-206ENST00000579558 BLKP51451 505 aa23.93■■□□□ 1.42
SHMT1-206ENST00000579558 NAP1L1P55209 391 aaKnown RBP23.93■■□□□ 1.42
SHMT1-206ENST00000579558 C1orf61Q13536 156 aa23.93■■□□□ 1.42
SHMT1-206ENST00000579558 LLGL1Q15334 1064 aa23.93■■□□□ 1.42
SHMT1-206ENST00000579558 DEFB133Q30KQ1 61 aa23.93■■□□□ 1.42
SHMT1-206ENST00000579558 TSPAN33Q86UF1 283 aa23.93■■□□□ 1.42
SHMT1-206ENST00000579558 HID1Q8IV36 788 aa23.93■■□□□ 1.42
SHMT1-206ENST00000579558 KATNAL2Q8IYT4 538 aa23.93■■□□□ 1.42
SHMT1-206ENST00000579558 SPC24Q8NBT2 197 aa23.93■■□□□ 1.42
SHMT1-206ENST00000579558 ACRBPQ8NEB7 543 aa23.93■■□□□ 1.42
SHMT1-206ENST00000579558 APOLD1Q96LR9 279 aa23.93■■□□□ 1.42
SHMT1-206ENST00000579558 TBATAQ96M53 351 aa23.93■■□□□ 1.42
SHMT1-206ENST00000579558 WDR92Q96MX6 357 aa23.93■■□□□ 1.42
SHMT1-206ENST00000579558 LRRC61Q9BV99 259 aa23.93■■□□□ 1.42
SHMT1-206ENST00000579558 BRD8Q9H0E9 1235 aa23.93■■□□□ 1.42
SHMT1-206ENST00000579558 KCTD5Q9NXV2 234 aa23.93■■□□□ 1.42
SHMT1-206ENST00000579558 SEPT10Q9P0V9 454 aa23.93■■□□□ 1.42
SHMT1-206ENST00000579558 IMPACTQ9P2X3 320 aa23.93■■□□□ 1.42
SHMT1-206ENST00000579558 KLQ9UEF7 1012 aa23.93■■□□□ 1.42
SHMT1-206ENST00000579558 SBDSQ9Y3A5 250 aaKnown RBP eCLIP23.93■■□□□ 1.42
SHMT1-206ENST00000579558 ZFHX4Q86UP3 3567 aa23.92■■□□□ 1.42
SHMT1-206ENST00000579558 USP24Q9UPU5 2620 aa23.92■■□□□ 1.42
SHMT1-206ENST00000579558 AKAP13Q12802 2813 aa23.92■■□□□ 1.42
SHMT1-206ENST00000579558 PSMD11O00231 422 aa23.92■■□□□ 1.42
SHMT1-206ENST00000579558 CACNB4O00305 520 aaPredicted RBP23.92■■□□□ 1.42
SHMT1-206ENST00000579558 CST8O60676 142 aa23.92■■□□□ 1.42
SHMT1-206ENST00000579558 ZRANB2O95218 330 aaKnown RBP eCLIP23.92■■□□□ 1.42
SHMT1-206ENST00000579558 RASGRP1O95267 797 aa23.92■■□□□ 1.42
SHMT1-206ENST00000579558 HNF1BP35680 557 aa23.92■■□□□ 1.42
SHMT1-206ENST00000579558 KIAA1024LP59773 190 aa23.92■■□□□ 1.42
SHMT1-206ENST00000579558 ALG11Q2TAA5 492 aa23.92■■□□□ 1.42
SHMT1-206ENST00000579558 TFDP3Q5H9I0 405 aa23.92■■□□□ 1.42
SHMT1-206ENST00000579558 ESRP1Q6NXG1 681 aaKnown RBP23.92■■□□□ 1.42
SHMT1-206ENST00000579558 HSD11B1LQ7Z5J1 315 aa23.92■■□□□ 1.42
SHMT1-206ENST00000579558 MARCH9Q86YJ5 346 aa23.92■■□□□ 1.42
SHMT1-206ENST00000579558 CCDC50Q8IVM0 306 aa23.92■■□□□ 1.42
SHMT1-206ENST00000579558 RCOR2Q8IZ40 523 aa23.92■■□□□ 1.42
SHMT1-206ENST00000579558 CNTD1Q8N815 330 aa23.92■■□□□ 1.42
SHMT1-206ENST00000579558 FAM181AQ8N9Y4 354 aa23.92■■□□□ 1.42
SHMT1-206ENST00000579558 TSACCQ96A04 125 aaPredicted RBP23.92■■□□□ 1.42
SHMT1-206ENST00000579558 FUBP1Q96AE4 644 aaKnown RBP23.92■■□□□ 1.42
SHMT1-206ENST00000579558 DTD2Q96FN9 168 aa23.92■■□□□ 1.42
SHMT1-206ENST00000579558 CALR3Q96L12 384 aaKnown RBP23.92■■□□□ 1.42
SHMT1-206ENST00000579558 CEP41Q9BYV8 373 aa23.92■■□□□ 1.42
SHMT1-206ENST00000579558 EVA1BQ9NVM1 165 aa23.92■■□□□ 1.42
SHMT1-206ENST00000579558 DUSP10Q9Y6W6 482 aa23.92■■□□□ 1.42
SHMT1-206ENST00000579558 FRYQ5TBA9 3013 aa23.92■■□□□ 1.42
SHMT1-206ENST00000579558 A0A0J9YYE9 177 aa23.91■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms