RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 ALG1LQ6GMV1 187 aa19.55■□□□□ 0.72
SS18-209ENST00000578595 BBS12Q6ZW61 710 aa19.55■□□□□ 0.72
SS18-209ENST00000578595 KDELC2Q7Z4H8 507 aa19.55■□□□□ 0.72
SS18-209ENST00000578595 LRRC8AQ8IWT6 810 aa19.55■□□□□ 0.72
SS18-209ENST00000578595 ARRDC2Q8TBH0 407 aa19.55■□□□□ 0.72
SS18-209ENST00000578595 SAP25Q8TEE9 199 aa19.55■□□□□ 0.72
SS18-209ENST00000578595 NUS1Q96E22 293 aa19.55■□□□□ 0.72
SS18-209ENST00000578595 RBM15Q96T37 977 aaKnown RBP eCLIP19.55■□□□□ 0.72
SS18-209ENST00000578595 CDC6Q99741 560 aa19.55■□□□□ 0.72
SS18-209ENST00000578595 KLHL8Q9P2G9 620 aaPredicted RBP19.55■□□□□ 0.72
SS18-209ENST00000578595 COL5A1P20908 1838 aaPredicted RBP19.55■□□□□ 0.72
SS18-209ENST00000578595 MIF4GDA9UHW6 222 aaKnown RBP19.54■□□□□ 0.72
SS18-209ENST00000578595 F5H423 210 aaPredicted RBP19.54■□□□□ 0.72
SS18-209ENST00000578595 APOC4-APOC2K7ER74 178 aa19.54■□□□□ 0.72
SS18-209ENST00000578595 FFAR2O15552 330 aa19.54■□□□□ 0.72
SS18-209ENST00000578595 APOC2P02655 101 aa19.54■□□□□ 0.72
SS18-209ENST00000578595 TNNT3P45378 269 aaPredicted RBP19.54■□□□□ 0.72
SS18-209ENST00000578595 RXRGP48443 463 aa19.54■□□□□ 0.72
SS18-209ENST00000578595 HNRNPKP61978 463 aaKnown RBP eCLIP19.54■□□□□ 0.72
SS18-209ENST00000578595 FZD2Q14332 565 aa19.54■□□□□ 0.72
SS18-209ENST00000578595 INPP5AQ14642 412 aa19.54■□□□□ 0.72
SS18-209ENST00000578595 PRKD1Q15139 912 aaPredicted RBP19.54■□□□□ 0.72
SS18-209ENST00000578595 AADACL2Q6P093 401 aa19.54■□□□□ 0.72
SS18-209ENST00000578595 ALG3Q92685 438 aa19.54■□□□□ 0.72
SS18-209ENST00000578595 ANP32BQ92688 251 aaKnown RBP19.54■□□□□ 0.72
SS18-209ENST00000578595 FERMT1Q9BQL6 677 aa19.54■□□□□ 0.72
SS18-209ENST00000578595 LZTFL1Q9NQ48 299 aa19.54■□□□□ 0.72
SS18-209ENST00000578595 OR1A2Q9Y585 309 aa19.54■□□□□ 0.72
SS18-209ENST00000578595 SPTY2D1-AS1A0A0U1RR47 76 aa19.53■□□□□ 0.72
SS18-209ENST00000578595 GOLGA6L9A6NEM1 432 aa19.53■□□□□ 0.72
SS18-209ENST00000578595 MTSS1O43312 755 aa19.53■□□□□ 0.72
SS18-209ENST00000578595 HEXIM1O94992 359 aaKnown RBP19.53■□□□□ 0.72
SS18-209ENST00000578595 PTPN3P26045 913 aa19.53■□□□□ 0.72
SS18-209ENST00000578595 HTR1BP28222 390 aa19.53■□□□□ 0.72
SS18-209ENST00000578595 PFN3P60673 137 aa19.53■□□□□ 0.72
SS18-209ENST00000578595 YPEL5P62699 121 aa19.53■□□□□ 0.72
SS18-209ENST00000578595 OTUD4Q01804 1114 aaKnown RBP19.53■□□□□ 0.72
SS18-209ENST00000578595 MTM1Q13496 603 aa19.53■□□□□ 0.72
SS18-209ENST00000578595 GALNT3Q14435 633 aa19.53■□□□□ 0.72
SS18-209ENST00000578595 TPRG1LQ5T0D9 272 aa19.53■□□□□ 0.72
SS18-209ENST00000578595 TSPAN33Q86UF1 283 aa19.53■□□□□ 0.72
SS18-209ENST00000578595 RNF10Q8N5U6 811 aaKnown RBP19.53■□□□□ 0.72
SS18-209ENST00000578595 CNTD1Q8N815 330 aa19.53■□□□□ 0.72
SS18-209ENST00000578595 ACTL9Q8TC94 416 aa19.53■□□□□ 0.72
SS18-209ENST00000578595 PIH1D2Q8WWB5 315 aa19.53■□□□□ 0.72
SS18-209ENST00000578595 IFT43Q96FT9 208 aa19.53■□□□□ 0.72
SS18-209ENST00000578595 SCRN2Q96FV2 425 aa19.53■□□□□ 0.72
SS18-209ENST00000578595 CNDP2Q96KP4 475 aaKnown RBP19.53■□□□□ 0.72
SS18-209ENST00000578595 QKIQ96PU8 341 aaKnown RBP eCLIP19.53■□□□□ 0.723e-6■■■■□ 21.4
SS18-209ENST00000578595 SMIM14Q96QK8 99 aa19.53■□□□□ 0.72
SS18-209ENST00000578595 FAM118BQ9BPY3 351 aa19.53■□□□□ 0.72
SS18-209ENST00000578595 CAAP1Q9H8G2 361 aa19.53■□□□□ 0.72
SS18-209ENST00000578595 APOBEC2Q9Y235 224 aaKnown RBP19.53■□□□□ 0.72
SS18-209ENST00000578595 PTPRBP23467 1997 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 A0A0J9YYE9 177 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 A0A0U1RQS6 177 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 CFAP69A5D8W1 941 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 CBFA2T3O75081 653 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 PIAS2O75928 621 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 TJP3O95049 919 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 LDOC1O95751 146 aaPredicted RBP19.52■□□□□ 0.72
SS18-209ENST00000578595 TRBC1P01850 177 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 SLC4A1P02730 911 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 FTH1P19P0C7X4 201 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 PYGMP11217 842 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 JUNDP17535 347 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 LHCGRP22888 699 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 HNF1BP35680 557 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 SKOR1P84550 965 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 NOMO1Q15155 1222 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 TCEA2Q15560 299 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 TEX44Q53QW1 395 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 FAXCQ5TGI0 409 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 LRRC66Q68CR7 880 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 MACC1Q6ZN28 852 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 PLA2G15Q8NCC3 412 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 HTR3CQ8WXA8 447 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 ALS2CR12Q96Q35 445 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 HERPUD2Q9BSE4 406 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 APOOQ9BUR5 198 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 ADGRE3Q9BY15 652 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 GLOD4Q9HC38 313 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 UCKL1Q9NWZ5 548 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 UBP1Q9NZI7 540 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 APOBEC3BQ9UH17 382 aaKnown RBP19.52■□□□□ 0.72
SS18-209ENST00000578595 MOSPD1Q9UJG1 213 aa19.52■□□□□ 0.72
SS18-209ENST00000578595 CAPN8A6NHC0 703 aa19.51■□□□□ 0.71
SS18-209ENST00000578595 HACD1B0YJ81 288 aa19.51■□□□□ 0.71
SS18-209ENST00000578595 CACNB4O00305 520 aaPredicted RBP19.51■□□□□ 0.71
SS18-209ENST00000578595 TOR1BO14657 336 aa19.51■□□□□ 0.71
SS18-209ENST00000578595 FZD6O60353 706 aa19.51■□□□□ 0.71
SS18-209ENST00000578595 PMPCBO75439 489 aa19.51■□□□□ 0.71
SS18-209ENST00000578595 MMP2P08253 660 aa19.51■□□□□ 0.71
SS18-209ENST00000578595 ALPPL2P10696 532 aa19.51■□□□□ 0.71
SS18-209ENST00000578595 NME1P15531 152 aaKnown RBP19.51■□□□□ 0.71
SS18-209ENST00000578595 NFKB1P19838 968 aa19.51■□□□□ 0.71
SS18-209ENST00000578595 DGKAP23743 735 aa19.51■□□□□ 0.71
SS18-209ENST00000578595 ETV3P41162 512 aa19.51■□□□□ 0.71
SS18-209ENST00000578595 PEX5P50542 639 aa19.51■□□□□ 0.71
SS18-209ENST00000578595 EIF3EP60228 445 aaKnown RBP19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms