RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 SNRNP25Q9BV90 132 aaKnown RBP21.15■□□□□ 0.98
VPS53-216ENST00000574029 PARVAQ9NVD7 372 aa21.15■□□□□ 0.98
VPS53-216ENST00000574029 LOXL2Q9Y4K0 774 aa21.15■□□□□ 0.98
VPS53-216ENST00000574029 JMJD7P0C870 316 aa21.14■□□□□ 0.97
VPS53-216ENST00000574029 ERCC2P18074 760 aa21.14■□□□□ 0.97
VPS53-216ENST00000574029 HLTFQ14527 1009 aaKnown RBP eCLIP21.14■□□□□ 0.97
VPS53-216ENST00000574029 PLEKHA7Q6IQ23 1121 aa21.14■□□□□ 0.97
VPS53-216ENST00000574029 ARHGAP36Q6ZRI8 547 aa21.14■□□□□ 0.97
VPS53-216ENST00000574029 SPRED1Q7Z699 444 aa21.14■□□□□ 0.97
VPS53-216ENST00000574029 NPWQ8N729 165 aa21.14■□□□□ 0.97
VPS53-216ENST00000574029 TMEM159Q96B96 161 aa21.14■□□□□ 0.97
VPS53-216ENST00000574029 LGR4Q9BXB1 951 aa21.14■□□□□ 0.97
VPS53-216ENST00000574029 TMEM168Q9H0V1 697 aa21.14■□□□□ 0.97
VPS53-216ENST00000574029 SP110Q9HB58 689 aa21.14■□□□□ 0.97
VPS53-216ENST00000574029 LRIT1Q9P2V4 623 aa21.14■□□□□ 0.97
VPS53-216ENST00000574029 PISDQ9UG56 409 aa21.14■□□□□ 0.97
VPS53-216ENST00000574029 RNF215Q9Y6U7 377 aa21.14■□□□□ 0.97
VPS53-216ENST00000574029 DFFAO00273 331 aa21.13■□□□□ 0.97
VPS53-216ENST00000574029 DAPK3O43293 454 aa21.13■□□□□ 0.97
VPS53-216ENST00000574029 NUDT21O43809 227 aaKnown RBP21.13■□□□□ 0.97
VPS53-216ENST00000574029 AP1S1P61966 158 aa21.13■□□□□ 0.97
VPS53-216ENST00000574029 TGIF1Q15583 401 aa21.13■□□□□ 0.97
VPS53-216ENST00000574029 SPECC1LQ69YQ0 1117 aa21.13■□□□□ 0.97
VPS53-216ENST00000574029 PNCKQ6P2M8 343 aa21.13■□□□□ 0.97
VPS53-216ENST00000574029 CYP4V2Q6ZWL3 525 aaPredicted RBP21.13■□□□□ 0.97
VPS53-216ENST00000574029 CCL4L1Q8NHW4 92 aa21.13■□□□□ 0.97
VPS53-216ENST00000574029 SPOCK2Q92563 424 aa21.13■□□□□ 0.97
VPS53-216ENST00000574029 PSKH2Q96QS6 385 aa21.13■□□□□ 0.97
VPS53-216ENST00000574029 HSD3B7Q9H2F3 369 aa21.13■□□□□ 0.97
VPS53-216ENST00000574029 CYP4F12Q9HCS2 524 aa21.13■□□□□ 0.97
VPS53-216ENST00000574029 ANO10Q9NW15 660 aa21.13■□□□□ 0.97
VPS53-216ENST00000574029 PCSK1NQ9UHG2 260 aa21.13■□□□□ 0.97
VPS53-216ENST00000574029 ASH1LQ9NR48 2969 aaKnown RBP21.12■□□□□ 0.97
VPS53-216ENST00000574029 TMEM191CA6NGB0 347 aa21.12■□□□□ 0.97
VPS53-216ENST00000574029 MBD3O95983 291 aa21.12■□□□□ 0.97
VPS53-216ENST00000574029 LIPCP11150 499 aa21.12■□□□□ 0.97
VPS53-216ENST00000574029 CDK11BP21127 795 aaKnown RBP21.12■□□□□ 0.97
VPS53-216ENST00000574029 TNFAIP3P21580 790 aa21.12■□□□□ 0.97
VPS53-216ENST00000574029 HCAR3P49019 387 aa21.12■□□□□ 0.97
VPS53-216ENST00000574029 SCNN1BP51168 640 aa21.12■□□□□ 0.97
VPS53-216ENST00000574029 RENBPP51606 427 aa21.12■□□□□ 0.97
VPS53-216ENST00000574029 PSTKQ8IV42 348 aaKnown RBP21.12■□□□□ 0.97
VPS53-216ENST00000574029 PELI3Q8N2H9 469 aa21.12■□□□□ 0.97
VPS53-216ENST00000574029 COQ10AQ96MF6 247 aa21.12■□□□□ 0.97
VPS53-216ENST00000574029 DPEP2Q9H4A9 486 aa21.12■□□□□ 0.97
VPS53-216ENST00000574029 WDR26Q9H7D7 661 aa21.12■□□□□ 0.97
VPS53-216ENST00000574029 MYO6Q9UM54 1294 aa21.12■□□□□ 0.97
VPS53-216ENST00000574029 UNC13CQ8NB66 2214 aa21.12■□□□□ 0.97
VPS53-216ENST00000574029 PRSS38A1L453 326 aa21.11■□□□□ 0.97
VPS53-216ENST00000574029 A8MX80 341 aa21.11■□□□□ 0.97
VPS53-216ENST00000574029 TMCO5BA8MYB1 307 aa21.11■□□□□ 0.97
VPS53-216ENST00000574029 B4DGG1 531 aa21.11■□□□□ 0.97
VPS53-216ENST00000574029 PDE2AO00408 941 aaPredicted RBP21.11■□□□□ 0.97
VPS53-216ENST00000574029 ATMINO43313 823 aaPredicted RBP21.11■□□□□ 0.97
VPS53-216ENST00000574029 ITIH1P19827 911 aa21.11■□□□□ 0.97
VPS53-216ENST00000574029 MIPP30301 263 aa21.11■□□□□ 0.97
VPS53-216ENST00000574029 ZNF135P52742 658 aaPredicted RBP21.11■□□□□ 0.97
VPS53-216ENST00000574029 B4GALNT1Q00973 533 aa21.11■□□□□ 0.97
VPS53-216ENST00000574029 ARHGEF7Q14155 803 aa21.11■□□□□ 0.97
VPS53-216ENST00000574029 LBRQ14739 615 aaKnown RBP21.11■□□□□ 0.97
VPS53-216ENST00000574029 NCAPHQ15003 741 aa21.11■□□□□ 0.97
VPS53-216ENST00000574029 ACOX1Q15067 660 aa21.11■□□□□ 0.97
VPS53-216ENST00000574029 TSR1Q2NL82 804 aaKnown RBP21.11■□□□□ 0.97
VPS53-216ENST00000574029 LINC00303Q3SY05 128 aa21.11■□□□□ 0.97
VPS53-216ENST00000574029 PPP6R3Q5H9R7 873 aaPredicted RBP21.11■□□□□ 0.97
VPS53-216ENST00000574029 SASS6Q6UVJ0 657 aa21.11■□□□□ 0.97
VPS53-216ENST00000574029 TMPRSS9Q7Z410 1059 aa21.11■□□□□ 0.97
VPS53-216ENST00000574029 C17orf82Q86X59 251 aaPredicted RBP21.11■□□□□ 0.97
VPS53-216ENST00000574029 SLITRK4Q8IW52 837 aa21.11■□□□□ 0.97
VPS53-216ENST00000574029 PAF1Q8N7H5 531 aa21.11■□□□□ 0.97
VPS53-216ENST00000574029 EXD3Q8N9H8 876 aa21.11■□□□□ 0.97
VPS53-216ENST00000574029 FNIP1Q8TF40 1166 aa21.11■□□□□ 0.97
VPS53-216ENST00000574029 SGF29Q96ES7 293 aa21.11■□□□□ 0.97
VPS53-216ENST00000574029 ZNF599Q96NL3 588 aa21.11■□□□□ 0.97
VPS53-216ENST00000574029 CMKLR1Q99788 373 aa21.11■□□□□ 0.97
VPS53-216ENST00000574029 CWC15Q9P013 229 aaKnown RBP21.11■□□□□ 0.97
VPS53-216ENST00000574029 B4GALT6Q9UBX8 382 aa21.11■□□□□ 0.97
VPS53-216ENST00000574029 SEPT3Q9UH03 358 aa21.11■□□□□ 0.97
VPS53-216ENST00000574029 TENM4Q6N022 2769 aa21.1■□□□□ 0.97
VPS53-216ENST00000574029 PRAMEF33A0A0G2JMD5 474 aa21.1■□□□□ 0.97
VPS53-216ENST00000574029 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP21.1■□□□□ 0.97
VPS53-216ENST00000574029 PRPSAP2O60256 369 aa21.1■□□□□ 0.97
VPS53-216ENST00000574029 PRAMEF10O60809 474 aa21.1■□□□□ 0.97
VPS53-216ENST00000574029 RNF8O76064 485 aa21.1■□□□□ 0.97
VPS53-216ENST00000574029 MYCLP1P12525 358 aaPredicted RBP21.1■□□□□ 0.97
VPS53-216ENST00000574029 ATP1A3P13637 1013 aa21.1■□□□□ 0.97
VPS53-216ENST00000574029 ETV5P41161 510 aa21.1■□□□□ 0.97
VPS53-216ENST00000574029 SLC10A7Q0GE19 358 aa21.1■□□□□ 0.97
VPS53-216ENST00000574029 SRSF6Q13247 344 aaKnown RBP21.1■□□□□ 0.97
VPS53-216ENST00000574029 DPYSQ14117 519 aa21.1■□□□□ 0.97
VPS53-216ENST00000574029 TMCO4Q5TGY1 634 aa21.1■□□□□ 0.97
VPS53-216ENST00000574029 USP53Q70EK8 1073 aa21.1■□□□□ 0.97
VPS53-216ENST00000574029 TP53INP2Q8IXH6 220 aa21.1■□□□□ 0.97
VPS53-216ENST00000574029 LZTR1Q8N653 840 aa21.1■□□□□ 0.97
VPS53-216ENST00000574029 GPBAR1Q8TDU6 330 aa21.1■□□□□ 0.97
VPS53-216ENST00000574029 WDR70Q9NW82 654 aa21.1■□□□□ 0.97
VPS53-216ENST00000574029 MOSPD1Q9UJG1 213 aa21.1■□□□□ 0.97
VPS53-216ENST00000574029 A0A1W2PQ67 120 aa21.09■□□□□ 0.97
VPS53-216ENST00000574029 TEX33O43247 280 aa21.09■□□□□ 0.97
VPS53-216ENST00000574029 HTRA2O43464 458 aaPredicted RBP21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms