RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 NARSO43776 548 aaKnown RBP13.72□□□□□ -0.21
CCDC40-209ENST00000573474 RNF40O75150 1001 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 RPP40O75818 363 aaKnown RBP13.72□□□□□ -0.21
CCDC40-209ENST00000573474 EPHX1P07099 455 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 ALPIP09923 528 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 TIMP2P16035 220 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 ARNTP27540 789 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 KIR2DL1P43626 348 aaPredicted RBP13.72□□□□□ -0.21
CCDC40-209ENST00000573474 SERPINB9P50453 376 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 ZNF140P52738 457 aaPredicted RBP13.72□□□□□ -0.21
CCDC40-209ENST00000573474 TFF2Q03403 129 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 TMED2Q15363 201 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 SLC44A4Q53GD3 710 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 TNFAIP8L3Q5GJ75 292 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 TEDDM1Q5T9Z0 273 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 LGSNQ5TDP6 509 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 FSTL4Q6MZW2 842 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 TPRG1Q6ZUI0 275 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 DSG4Q86SJ6 1040 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 KRT222Q8N1A0 295 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 ZNF513Q8N8E2 541 aaPredicted RBP13.72□□□□□ -0.21
CCDC40-209ENST00000573474 MAFAQ8NHW3 353 aaPredicted RBP13.72□□□□□ -0.21
CCDC40-209ENST00000573474 EZH1Q92800 747 aaPredicted RBP13.72□□□□□ -0.21
CCDC40-209ENST00000573474 HDAC10Q969S8 669 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 TLCD1Q96CP7 247 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 DNAJC1Q96KC8 554 aaKnown RBP13.72□□□□□ -0.21
CCDC40-209ENST00000573474 MCCC1Q96RQ3 725 aaPredicted RBP13.72□□□□□ -0.21
CCDC40-209ENST00000573474 ACOX2Q99424 681 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 C19orf43Q9BQ61 176 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 FAM167BQ9BTA0 163 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 GPR63Q9BZJ6 419 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 PRSS16Q9NQE7 514 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 IARS2Q9NSE4 1012 aaKnown RBP13.72□□□□□ -0.21
CCDC40-209ENST00000573474 CACNA2D2Q9NY47 1150 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 IL1RAPL1Q9NZN1 696 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 CTNNAL1Q9UBT7 734 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 TBK1Q9UHD2 729 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 PPM1HQ9ULR3 514 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 NOVA2Q9UNW9 492 aaKnown RBP13.72□□□□□ -0.21
CCDC40-209ENST00000573474 MUC22E2RYF6 1773 aaPredicted RBP13.71□□□□□ -0.21
CCDC40-209ENST00000573474 SPTBN5Q9NRC6 3674 aaKnown RBP13.71□□□□□ -0.21
CCDC40-209ENST00000573474 IQANK1A0A1B0GTG1 560 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 C16orf96A6NNT2 1141 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 BUD23O43709 281 aaKnown RBP13.71□□□□□ -0.21
CCDC40-209ENST00000573474 EGFP01133 1207 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 OAS2P29728 719 aaKnown RBP13.71□□□□□ -0.21
CCDC40-209ENST00000573474 TIE1P35590 1138 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 HMGCLP35914 325 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 HADHAP40939 763 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 ARSDP51689 593 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 SEC13P55735 322 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 PRAMEP78395 509 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 PTPRRQ15256 657 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 CDKN3Q16667 212 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 UGP2Q16851 508 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 GRTP1Q5TC63 336 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 KCTD16Q68DU8 428 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 SDE2Q6IQ49 451 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 NEPROQ6NW34 567 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 LYSMD3Q7Z3D4 306 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 CNTN4Q8IWV2 1026 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 ADHFE1Q8IWW8 467 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 LMNTD2Q8IXW0 634 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 CHPFQ8IZ52 775 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 CYP4X1Q8N118 509 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 OR4K2Q8NGD2 314 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 OR13C4Q8NGS5 318 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 OR6P1Q8NGX9 317 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 CALML6Q8TD86 181 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 CDKN2AIPNLQ96HQ2 116 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 TBATAQ96M53 351 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 AGAP2Q99490 1192 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 CPNE1Q99829 537 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 MFSD1Q9H3U5 465 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 ZFYVE1Q9HBF4 777 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 TXNDC16Q9P2K2 825 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 PKP3Q9Y446 797 aa13.71□□□□□ -0.21
CCDC40-209ENST00000573474 ANKRD36A6QL64 1941 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 COL4A2P08572 1712 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 XIRP2A4UGR9 3374 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 C1orf232A0A0U1RR37 186 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 ANTXRLA6NF34 631 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 UPK3BL1B0FP48 263 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 UPK3BL2E5RIL1 263 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 GOLGA8TH3BQL2 631 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 KPNA3O00505 521 aaPredicted RBP13.7□□□□□ -0.22
CCDC40-209ENST00000573474 UGT1A9O60656 530 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 FAM155BO75949 473 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 KRT37O76014 449 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 KRT38O76015 456 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 SNRPAP09012 282 aaKnown RBP13.7□□□□□ -0.22
CCDC40-209ENST00000573474 CHRM1P11229 460 aaPredicted RBP13.7□□□□□ -0.22
CCDC40-209ENST00000573474 CYP2A6P11509 494 aaPredicted RBP13.7□□□□□ -0.22
CCDC40-209ENST00000573474 BMP1P13497 986 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 XPAP23025 273 aaPredicted RBP13.7□□□□□ -0.22
CCDC40-209ENST00000573474 ITGB7P26010 798 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 CNTFP26441 200 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 NTSR1P30989 418 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 GP5P40197 560 aa13.7□□□□□ -0.22
CCDC40-209ENST00000573474 CSE1LP55060 971 aaKnown RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms