RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 TAAR2Q9P1P5 351 aa16.24■□□□□ 0.19
CLK3-223ENST00000568488 PCDHGC3Q9UN70 934 aa16.24■□□□□ 0.19
CLK3-223ENST00000568488 MFHAS1Q9Y4C4 1052 aa16.24■□□□□ 0.19
CLK3-223ENST00000568488 CRYBG3Q68DQ2 2970 aa16.24■□□□□ 0.19
CLK3-223ENST00000568488 RP1L1Q8IWN7 2480 aaPredicted RBP16.23■□□□□ 0.19
CLK3-223ENST00000568488 IGHV1OR21-1A0A087WYE8 117 aa16.23■□□□□ 0.19
CLK3-223ENST00000568488 PRSS38A1L453 326 aa16.23■□□□□ 0.19
CLK3-223ENST00000568488 BECN2A8MW95 431 aa16.23■□□□□ 0.19
CLK3-223ENST00000568488 PPM1DO15297 605 aa16.23■□□□□ 0.19
CLK3-223ENST00000568488 KDELR3O43731 214 aa16.23■□□□□ 0.19
CLK3-223ENST00000568488 RAMP2O60895 175 aa16.23■□□□□ 0.19
CLK3-223ENST00000568488 RECQL5O94762 991 aaPredicted RBP16.23■□□□□ 0.19
CLK3-223ENST00000568488 STK17BO94768 372 aa16.23■□□□□ 0.19
CLK3-223ENST00000568488 HSP90AA1P07900 732 aaKnown RBP16.23■□□□□ 0.19
CLK3-223ENST00000568488 POU3F2P20265 443 aaPredicted RBP16.23■□□□□ 0.19
CLK3-223ENST00000568488 AK4P27144 223 aaPredicted RBP16.23■□□□□ 0.19
CLK3-223ENST00000568488 TNFRSF8P28908 595 aa16.23■□□□□ 0.19
CLK3-223ENST00000568488 CSF2RBP32927 897 aa16.23■□□□□ 0.19
CLK3-223ENST00000568488 MAN1A1P33908 653 aa16.23■□□□□ 0.19
CLK3-223ENST00000568488 MAPKAPK2P49137 400 aa16.23■□□□□ 0.19
CLK3-223ENST00000568488 RIPPLY3P57055 190 aa16.23■□□□□ 0.19
CLK3-223ENST00000568488 ILF3Q12906 894 aaKnown RBP eCLIP16.23■□□□□ 0.19
CLK3-223ENST00000568488 AGERQ15109 404 aa16.23■□□□□ 0.19
CLK3-223ENST00000568488 FAM102AQ5T9C2 384 aaPredicted RBP16.23■□□□□ 0.19
CLK3-223ENST00000568488 TMEM71Q6P5X7 295 aa16.23■□□□□ 0.19
CLK3-223ENST00000568488 SLC30A9Q6PML9 568 aa16.23■□□□□ 0.19
CLK3-223ENST00000568488 CEACAM20Q6UY09 585 aa16.23■□□□□ 0.19
CLK3-223ENST00000568488 MAMDC2Q7Z304 686 aaPredicted RBP16.23■□□□□ 0.19
CLK3-223ENST00000568488 NRROSQ86YC3 692 aa16.23■□□□□ 0.19
CLK3-223ENST00000568488 BMPERQ8N8U9 685 aa16.23■□□□□ 0.19
CLK3-223ENST00000568488 AHCYL2Q96HN2 611 aaKnown RBP16.23■□□□□ 0.19
CLK3-223ENST00000568488 SUV39H2Q9H5I1 410 aa16.23■□□□□ 0.19
CLK3-223ENST00000568488 ARHGEF17Q96PE2 2063 aaPredicted RBP16.23■□□□□ 0.19
CLK3-223ENST00000568488 DOPEY1Q5JWR5 2465 aa16.22■□□□□ 0.19
CLK3-223ENST00000568488 ANKRD36A6QL64 1941 aa16.22■□□□□ 0.19
CLK3-223ENST00000568488 PSMA7O14818 248 aa16.22■□□□□ 0.19
CLK3-223ENST00000568488 DDAH2O95865 285 aa16.22■□□□□ 0.19
CLK3-223ENST00000568488 RHOQP17081 205 aa16.22■□□□□ 0.19
CLK3-223ENST00000568488 ELAVL4P26378 380 aaKnown RBP16.22■□□□□ 0.19
CLK3-223ENST00000568488 MC2RQ01718 297 aa16.22■□□□□ 0.19
CLK3-223ENST00000568488 STIM1Q13586 685 aa16.22■□□□□ 0.19
CLK3-223ENST00000568488 ERV3-1Q14264 604 aa16.22■□□□□ 0.19
CLK3-223ENST00000568488 EIF2S3LQ2VIR3 472 aaKnown RBP16.22■□□□□ 0.19
CLK3-223ENST00000568488 ISM2Q6H9L7 571 aa16.22■□□□□ 0.19
CLK3-223ENST00000568488 DPYSL5Q9BPU6 564 aa16.22■□□□□ 0.19
CLK3-223ENST00000568488 TRIT1Q9H3H1 467 aaKnown RBP16.22■□□□□ 0.19
CLK3-223ENST00000568488 WDR26Q9H7D7 661 aa16.22■□□□□ 0.19
CLK3-223ENST00000568488 TMEM51Q9NW97 253 aa16.22■□□□□ 0.19
CLK3-223ENST00000568488 OR12D3Q9UGF7 316 aa16.22■□□□□ 0.19
CLK3-223ENST00000568488 TLK1Q9UKI8 766 aa16.22■□□□□ 0.19
CLK3-223ENST00000568488 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.22■□□□□ 0.19
CLK3-223ENST00000568488 ZSCAN5CA6NGD5 496 aaPredicted RBP16.21■□□□□ 0.19
CLK3-223ENST00000568488 PDE2AO00408 941 aaPredicted RBP16.21■□□□□ 0.19
CLK3-223ENST00000568488 HOXC4P09017 264 aaPredicted RBP16.21■□□□□ 0.19
CLK3-223ENST00000568488 GNPDA1P46926 289 aa16.21■□□□□ 0.19
CLK3-223ENST00000568488 PTK2Q05397 1052 aa16.21■□□□□ 0.19
CLK3-223ENST00000568488 SQSTM1Q13501 440 aa16.21■□□□□ 0.19
CLK3-223ENST00000568488 CRTC2Q53ET0 693 aaPredicted RBP16.21■□□□□ 0.19
CLK3-223ENST00000568488 PHLDB2Q86SQ0 1253 aa16.21■□□□□ 0.19
CLK3-223ENST00000568488 NLRP14Q86W24 1093 aa16.21■□□□□ 0.19
CLK3-223ENST00000568488 PAF1Q8N7H5 531 aa16.21■□□□□ 0.19
CLK3-223ENST00000568488 HCAR2Q8TDS4 363 aa16.21■□□□□ 0.19
CLK3-223ENST00000568488 RNF31Q96EP0 1072 aa16.21■□□□□ 0.19
CLK3-223ENST00000568488 CFAP57Q96MR6 1250 aa16.21■□□□□ 0.19
CLK3-223ENST00000568488 GSDMAQ96QA5 445 aa16.21■□□□□ 0.19
CLK3-223ENST00000568488 ZPBPQ9BS86 351 aa16.21■□□□□ 0.19
CLK3-223ENST00000568488 CRACR2AQ9BSW2 395 aa16.21■□□□□ 0.19
CLK3-223ENST00000568488 PDCL3Q9H2J4 239 aa16.21■□□□□ 0.19
CLK3-223ENST00000568488 APMAPQ9HDC9 416 aa16.21■□□□□ 0.19
CLK3-223ENST00000568488 TMEM248Q9NWD8 314 aa16.21■□□□□ 0.19
CLK3-223ENST00000568488 ATP8A1Q9Y2Q0 1164 aa16.21■□□□□ 0.19
CLK3-223ENST00000568488 RPS6KL1Q9Y6S9 549 aa16.21■□□□□ 0.19
CLK3-223ENST00000568488 GOLGA8SH3BPF8 625 aa16.2■□□□□ 0.18
CLK3-223ENST00000568488 KATNA1O75449 491 aa16.2■□□□□ 0.18
CLK3-223ENST00000568488 RFPL1O75677 317 aa16.2■□□□□ 0.18
CLK3-223ENST00000568488 BMP6P22004 513 aa16.2■□□□□ 0.18
CLK3-223ENST00000568488 F8A1P23610 371 aa16.2■□□□□ 0.18
CLK3-223ENST00000568488 TRIM23P36406 574 aa16.2■□□□□ 0.18
CLK3-223ENST00000568488 FLT3P36888 993 aa16.2■□□□□ 0.18
CLK3-223ENST00000568488 DLSTP36957 453 aa16.2■□□□□ 0.18
CLK3-223ENST00000568488 MMP12P39900 470 aa16.2■□□□□ 0.18
CLK3-223ENST00000568488 STAT5AP42229 794 aa16.2■□□□□ 0.18
CLK3-223ENST00000568488 KRT85P78386 507 aa16.2■□□□□ 0.18
CLK3-223ENST00000568488 ATP11AP98196 1134 aa16.2■□□□□ 0.18
CLK3-223ENST00000568488 RAPGEF1Q13905 1077 aa16.2■□□□□ 0.18
CLK3-223ENST00000568488 KLHL10Q6JEL2 608 aa16.2■□□□□ 0.18
CLK3-223ENST00000568488 PNCKQ6P2M8 343 aa16.2■□□□□ 0.18
CLK3-223ENST00000568488 ZNF761Q86XN6 746 aaPredicted RBP16.2■□□□□ 0.18
CLK3-223ENST00000568488 CAMK1DQ8IU85 385 aa16.2■□□□□ 0.18
CLK3-223ENST00000568488 TRIM59Q8IWR1 403 aa16.2■□□□□ 0.18
CLK3-223ENST00000568488 NAGSQ8N159 534 aa16.2■□□□□ 0.18
CLK3-223ENST00000568488 PRR7Q8TB68 274 aa16.2■□□□□ 0.18
CLK3-223ENST00000568488 CASKIN2Q8WXE0 1202 aa16.2■□□□□ 0.18
CLK3-223ENST00000568488 C18orf8Q96DM3 657 aa16.2■□□□□ 0.18
CLK3-223ENST00000568488 DHTKD1Q96HY7 919 aaPredicted RBP16.2■□□□□ 0.18
CLK3-223ENST00000568488 POLHQ9Y253 713 aa16.2■□□□□ 0.18
CLK3-223ENST00000568488 TMEM184BQ9Y519 407 aaPredicted RBP16.2■□□□□ 0.18
CLK3-223ENST00000568488 TRBV23OR9-2A0A075B6M9 112 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 A8MX80 341 aa16.19■□□□□ 0.18
CLK3-223ENST00000568488 FAM72CH0Y354 149 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms