RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 IPO13O94829 963 aaKnown RBP20.32■□□□□ 0.84
CLN3-230ENST00000568076 F11P03951 625 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 RBP1P09455 135 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 ITGAXP20702 1163 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 FDXRP22570 491 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 PLK1P53350 603 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 SPOUT1Q5T280 376 aaKnown RBP20.32■□□□□ 0.84
CLN3-230ENST00000568076 TMEM198Q66K66 360 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 FAM45BPQ6NSW5 357 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 KLC3Q6P597 504 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 TMEM150AQ86TG1 271 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 SLC39A11Q8N1S5 342 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 OR4L1Q8NH43 312 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 FAM45AQ8TCE6 357 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 DTX3LQ8TDB6 740 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 STON2Q8WXE9 905 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 CNDP1Q96KN2 507 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 TNFRSF12AQ9NP84 129 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 SMPD4Q9NXE4 827 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 CIB2O75838 187 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 CD160O95971 181 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 SLC4A1P02730 911 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 PDHA1P08559 390 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 SERPINB5P36952 375 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 ZNF140P52738 457 aaPredicted RBP20.32■□□□□ 0.84
CLN3-230ENST00000568076 SESN3P58005 492 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 ACTR3P61158 418 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 RFTN1Q14699 578 aaPredicted RBP20.32■□□□□ 0.84
CLN3-230ENST00000568076 SH2D4BQ5SQS7 431 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 RNF219Q5W0B1 726 aaPredicted RBP20.32■□□□□ 0.84
CLN3-230ENST00000568076 CNKSR3Q6P9H4 555 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 ISCA2Q86U28 154 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 MDGA1Q8NFP4 955 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 CFAP61Q8NHU2 1237 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 NRG4Q8WWG1 115 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 STMN2Q93045 179 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 CDKN2AIPNLQ96HQ2 116 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 ZFRQ96KR1 1074 aaKnown RBP20.32■□□□□ 0.84
CLN3-230ENST00000568076 TDRD1Q9BXT4 1180 aaKnown RBP20.32■□□□□ 0.84
CLN3-230ENST00000568076 ALG9Q9H6U8 611 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 G3BP2Q9UN86 482 aaKnown RBP20.32■□□□□ 0.84
CLN3-230ENST00000568076 CDYLQ9Y232 598 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 SSX2IPQ9Y2D8 614 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 SCAMP3O14828 347 aaKnown RBP20.31■□□□□ 0.84
CLN3-230ENST00000568076 SP100P23497 879 aaPredicted RBP20.31■□□□□ 0.84
CLN3-230ENST00000568076 PIK3R1P27986 724 aa20.31■□□□□ 0.84
CLN3-230ENST00000568076 SLC26A3P40879 764 aa20.31■□□□□ 0.84
CLN3-230ENST00000568076 ERFP50548 548 aa20.31■□□□□ 0.84
CLN3-230ENST00000568076 ARF5P84085 180 aa20.31■□□□□ 0.84
CLN3-230ENST00000568076 SULT2A1Q06520 285 aa20.31■□□□□ 0.84
CLN3-230ENST00000568076 TWF1Q12792 350 aa20.31■□□□□ 0.84
CLN3-230ENST00000568076 CUL3Q13618 768 aa20.31■□□□□ 0.84
CLN3-230ENST00000568076 TAF12Q16514 161 aa20.31■□□□□ 0.84
CLN3-230ENST00000568076 MRNIPQ6NTE8 343 aa20.31■□□□□ 0.84
CLN3-230ENST00000568076 ACAD11Q709F0 780 aa20.31■□□□□ 0.84
CLN3-230ENST00000568076 PTERQ96BW5 349 aa20.31■□□□□ 0.84
CLN3-230ENST00000568076 ZNF689Q96CS4 500 aaPredicted RBP20.31■□□□□ 0.84
CLN3-230ENST00000568076 PHF21BQ96EK2 531 aa20.31■□□□□ 0.84
CLN3-230ENST00000568076 SLC22A12Q96S37 553 aa20.31■□□□□ 0.84
CLN3-230ENST00000568076 CYP2S1Q96SQ9 504 aa20.31■□□□□ 0.84
CLN3-230ENST00000568076 SCUBE2Q9NQ36 999 aa20.31■□□□□ 0.84
CLN3-230ENST00000568076 CATSPERZQ9NTU4 200 aa20.31■□□□□ 0.84
CLN3-230ENST00000568076 NLE1Q9NVX2 485 aaPredicted RBP20.31■□□□□ 0.84
CLN3-230ENST00000568076 STX18Q9P2W9 335 aaKnown RBP20.31■□□□□ 0.84
CLN3-230ENST00000568076 LRRC42Q9Y546 428 aa20.31■□□□□ 0.84
CLN3-230ENST00000568076 SORBS2O94875 1100 aaKnown RBP20.3■□□□□ 0.84
CLN3-230ENST00000568076 OGNP20774 298 aaKnown RBP20.3■□□□□ 0.84
CLN3-230ENST00000568076 GCKP35557 465 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 STC1P52823 247 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 BTKQ06187 659 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 C1orf146Q5VVC0 180 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 FAM117BQ6P1L5 589 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 PGM2L1Q6PCE3 622 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 CPSF7Q8N684 471 aaKnown RBP20.3■□□□□ 0.84
CLN3-230ENST00000568076 ACTRT2Q8TDY3 377 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 AUTS2Q8WXX7 1259 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 TOP1MTQ969P6 601 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 RMDN1Q96DB5 314 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 MAELQ96JY0 434 aaKnown RBP20.3■□□□□ 0.84
CLN3-230ENST00000568076 TOX2Q96NM4 488 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 CCDC28BQ9BUN5 200 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 STOML1Q9UBI4 398 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 TBX21Q9UL17 535 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 WASF2Q9Y6W5 498 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 ANAPC1Q9H1A4 1944 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 SNAP91O60641 907 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 SUOXP51687 545 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 SLC34A1Q06495 639 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 CCDC6Q16204 474 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 TYSND1Q2T9J0 566 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 PPM1LQ5SGD2 360 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 LINGO4Q6UY18 593 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 DNAJB7Q7Z6W7 309 aaPredicted RBP20.3■□□□□ 0.84
CLN3-230ENST00000568076 MYLK4Q86YV6 388 aaPredicted RBP20.3■□□□□ 0.84
CLN3-230ENST00000568076 CCDC126Q96EE4 140 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 TMEM169Q96HH4 297 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 ZNF558Q96NG5 402 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 RTKNQ9BST9 563 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 ZBED2Q9BTP6 218 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 MUC3BQ9H195 1237 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms