RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 PEX11BO96011 259 aa16.13■□□□□ 0.17
CLN3-229ENST00000567963 SERPINC1P01008 464 aa16.13■□□□□ 0.17
CLN3-229ENST00000567963 AMPD1P23109 780 aa16.13■□□□□ 0.17
CLN3-229ENST00000567963 ARL4AP40617 200 aa16.13■□□□□ 0.17
CLN3-229ENST00000567963 TMPRSS3P57727 454 aa16.13■□□□□ 0.17
CLN3-229ENST00000567963 FIGNQ5HY92 759 aa16.13■□□□□ 0.17
CLN3-229ENST00000567963 CAVIN1Q6NZI2 390 aaKnown RBP16.13■□□□□ 0.17
CLN3-229ENST00000567963 PNCKQ6P2M8 343 aa16.13■□□□□ 0.17
CLN3-229ENST00000567963 FOXR1Q6PIV2 292 aa16.13■□□□□ 0.17
CLN3-229ENST00000567963 TMCO3Q6UWJ1 677 aa16.13■□□□□ 0.17
CLN3-229ENST00000567963 ARL14Q8N4G2 192 aa16.13■□□□□ 0.17
CLN3-229ENST00000567963 GPR156Q8NFN8 814 aa16.13■□□□□ 0.17
CLN3-229ENST00000567963 OR6C4Q8NGE1 309 aa16.13■□□□□ 0.17
CLN3-229ENST00000567963 OR1E3Q8WZA6 343 aa16.13■□□□□ 0.17
CLN3-229ENST00000567963 HSPH1Q92598 858 aa16.13■□□□□ 0.17
CLN3-229ENST00000567963 LGR4Q9BXB1 951 aa16.13■□□□□ 0.17
CLN3-229ENST00000567963 SYNDIG1Q9H7V2 258 aa16.13■□□□□ 0.17
CLN3-229ENST00000567963 CPNE5Q9HCH3 593 aa16.13■□□□□ 0.17
CLN3-229ENST00000567963 MRPL40Q9NQ50 206 aaKnown RBP16.13■□□□□ 0.17
CLN3-229ENST00000567963 SSUH2Q9Y2M2 353 aa16.13■□□□□ 0.17
CLN3-229ENST00000567963 PCDHGC4Q9Y5F7 938 aa16.13■□□□□ 0.17
CLN3-229ENST00000567963 CCDC187A0A096LP49 1063 aa16.12■□□□□ 0.17
CLN3-229ENST00000567963 A0A1W2PQ67 120 aa16.12■□□□□ 0.17
CLN3-229ENST00000567963 TNFRSF10CO14798 259 aa16.12■□□□□ 0.17
CLN3-229ENST00000567963 MAFKO60675 156 aa16.12■□□□□ 0.17
CLN3-229ENST00000567963 RARAP10276 462 aa16.12■□□□□ 0.17
CLN3-229ENST00000567963 CR2P20023 1033 aa16.12■□□□□ 0.17
CLN3-229ENST00000567963 KELP23276 732 aa16.12■□□□□ 0.17
CLN3-229ENST00000567963 CCL7P80098 99 aa16.12■□□□□ 0.17
CLN3-229ENST00000567963 C19orf57Q0VDD7 668 aa16.12■□□□□ 0.17
CLN3-229ENST00000567963 PIGHQ14442 188 aaPredicted RBP16.12■□□□□ 0.17
CLN3-229ENST00000567963 ZNF235Q14590 738 aa16.12■□□□□ 0.17
CLN3-229ENST00000567963 ACOX1Q15067 660 aa16.12■□□□□ 0.17
CLN3-229ENST00000567963 HGSNATQ68CP4 663 aa16.12■□□□□ 0.17
CLN3-229ENST00000567963 OGFOD3Q6PK18 319 aa16.12■□□□□ 0.17
CLN3-229ENST00000567963 PELI3Q8N2H9 469 aa16.12■□□□□ 0.17
CLN3-229ENST00000567963 PGBD5Q8N414 524 aa16.12■□□□□ 0.17
CLN3-229ENST00000567963 CSPG4P5Q96PW8 444 aa16.12■□□□□ 0.17
CLN3-229ENST00000567963 GFM1Q96RP9 751 aaKnown RBP16.12■□□□□ 0.17
CLN3-229ENST00000567963 NUDCD1Q96RS6 583 aa16.12■□□□□ 0.17
CLN3-229ENST00000567963 FUCA2Q9BTY2 467 aa16.12■□□□□ 0.17
CLN3-229ENST00000567963 FGF22Q9HCT0 170 aa16.12■□□□□ 0.17
CLN3-229ENST00000567963 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.12■□□□□ 0.17
CLN3-229ENST00000567963 B4GALT6Q9UBX8 382 aa16.12■□□□□ 0.17
CLN3-229ENST00000567963 A0A1W2PQM1 296 aa16.11■□□□□ 0.17
CLN3-229ENST00000567963 SOCS5O75159 536 aa16.11■□□□□ 0.17
CLN3-229ENST00000567963 C1QL1O75973 258 aa16.11■□□□□ 0.17
CLN3-229ENST00000567963 TNFSF15O95150 251 aa16.11■□□□□ 0.17
CLN3-229ENST00000567963 HSPA9P38646 679 aaKnown RBP16.11■□□□□ 0.17
CLN3-229ENST00000567963 MLLT3P42568 568 aaPredicted RBP16.11■□□□□ 0.17
CLN3-229ENST00000567963 ARHGAP40Q5TG30 622 aa16.11■□□□□ 0.17
CLN3-229ENST00000567963 TXNRD3NBQ6F5E7 133 aa16.11■□□□□ 0.17
CLN3-229ENST00000567963 PCSK4Q6UW60 755 aa16.11■□□□□ 0.17
CLN3-229ENST00000567963 TAF8Q7Z7C8 310 aa16.11■□□□□ 0.17
CLN3-229ENST00000567963 B3GNT8Q7Z7M8 397 aa16.11■□□□□ 0.17
CLN3-229ENST00000567963 FAM46DQ8NEK8 389 aa16.11■□□□□ 0.17
CLN3-229ENST00000567963 CCDC97Q96F63 343 aaPredicted RBP16.11■□□□□ 0.17
CLN3-229ENST00000567963 LIN37Q96GY3 246 aaPredicted RBP16.11■□□□□ 0.17
CLN3-229ENST00000567963 COQ10AQ96MF6 247 aa16.11■□□□□ 0.17
CLN3-229ENST00000567963 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.11■□□□□ 0.17
CLN3-229ENST00000567963 TMEM168Q9H0V1 697 aa16.11■□□□□ 0.17
CLN3-229ENST00000567963 WDR26Q9H7D7 661 aa16.11■□□□□ 0.17
CLN3-229ENST00000567963 APPL1Q9UKG1 709 aa16.11■□□□□ 0.17
CLN3-229ENST00000567963 BZW2Q9Y6E2 419 aaKnown RBP16.11■□□□□ 0.17
CLN3-229ENST00000567963 D6RAR5 112 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 ERVH48-1M5A8F1 160 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 RPLP0P05388 317 aaKnown RBP16.1■□□□□ 0.17
CLN3-229ENST00000567963 ITGA2BP08514 1039 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 GLB1P16278 677 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 CNGA3Q16281 694 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 TDRD12Q587J7 1177 aaKnown RBP16.1■□□□□ 0.17
CLN3-229ENST00000567963 CLEC14AQ86T13 490 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 CBARPQ8N350 705 aaPredicted RBP16.1■□□□□ 0.17
CLN3-229ENST00000567963 NIPA2Q8N8Q9 360 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 PDCD6IPQ8WUM4 868 aaKnown RBP16.1■□□□□ 0.17
CLN3-229ENST00000567963 TEKT4Q8WW24 435 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 SYN2Q92777 582 aaPredicted RBP16.1■□□□□ 0.17
CLN3-229ENST00000567963 MGME1Q9BQP7 344 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 THAP2Q9H0W7 228 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 LRRN3Q9H3W5 708 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 NOD2Q9HC29 1040 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 CYP4F12Q9HCS2 524 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 KCTD5Q9NXV2 234 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 A0A1W2PQJ5 194 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 PRSS38A1L453 326 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 TMX2-CTNND1H3BSU7 103 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 PDE2AO00408 941 aaPredicted RBP16.1■□□□□ 0.17
CLN3-229ENST00000567963 PLD2O14939 933 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 NOBOXO60393 691 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 PNLIPP16233 465 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 MAXP61244 160 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 SLC25A11Q02978 314 aaKnown RBP16.1■□□□□ 0.17
CLN3-229ENST00000567963 EIF3IQ13347 325 aaKnown RBP16.1■□□□□ 0.17
CLN3-229ENST00000567963 RALGPS1Q5JS13 557 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 MARC1Q5VT66 337 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 SFTPA2Q8IWL1 248 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 BBS5Q8N3I7 341 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 CCL4L1Q8NHW4 92 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 SNRNP27Q8WVK2 155 aaKnown RBP16.1■□□□□ 0.17
CLN3-229ENST00000567963 NUS1Q96E22 293 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms