RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 MAN1A1P33908 653 aa20.79■□□□□ 0.92
CLN3-219ENST00000565778 C6orf132Q5T0Z8 1188 aa20.79■□□□□ 0.92
CLN3-219ENST00000565778 ESRP1Q6NXG1 681 aaKnown RBP20.79■□□□□ 0.92
CLN3-219ENST00000565778 GUSBP11Q6P575 273 aa20.79■□□□□ 0.92
CLN3-219ENST00000565778 NDUFAF2Q8N183 169 aa20.79■□□□□ 0.92
CLN3-219ENST00000565778 HNRNPLLQ8WVV9 542 aaKnown RBP20.79■□□□□ 0.92
CLN3-219ENST00000565778 SPOCK2Q92563 424 aa20.79■□□□□ 0.92
CLN3-219ENST00000565778 BOCQ9BWV1 1114 aa20.79■□□□□ 0.92
CLN3-219ENST00000565778 RBM22Q9NW64 420 aaKnown RBP eCLIP20.79■□□□□ 0.92
CLN3-219ENST00000565778 GULP1Q9UBP9 304 aa20.79■□□□□ 0.92
CLN3-219ENST00000565778 FREM2Q5SZK8 3169 aa20.79■□□□□ 0.92
CLN3-219ENST00000565778 ZZEF1O43149 2961 aa20.78■□□□□ 0.92
CLN3-219ENST00000565778 PGLSO95336 258 aa20.78■□□□□ 0.92
CLN3-219ENST00000565778 CYP2A6P11509 494 aaPredicted RBP20.78■□□□□ 0.92
CLN3-219ENST00000565778 KELP23276 732 aa20.78■□□□□ 0.92
CLN3-219ENST00000565778 KDELR1P24390 212 aa20.78■□□□□ 0.92
CLN3-219ENST00000565778 ARHGAP25P42331 645 aa20.78■□□□□ 0.92
CLN3-219ENST00000565778 RTP5Q14D33 572 aa20.78■□□□□ 0.92
CLN3-219ENST00000565778 PNCKQ6P2M8 343 aa20.78■□□□□ 0.92
CLN3-219ENST00000565778 CNGA4Q8IV77 575 aa20.78■□□□□ 0.92
CLN3-219ENST00000565778 CCNYQ8ND76 341 aa20.78■□□□□ 0.92
CLN3-219ENST00000565778 OR56A4Q8NGH8 313 aa20.78■□□□□ 0.92
CLN3-219ENST00000565778 RAPGEF5Q92565 580 aa20.78■□□□□ 0.92
CLN3-219ENST00000565778 FUBP1Q96AE4 644 aaKnown RBP20.78■□□□□ 0.92
CLN3-219ENST00000565778 SCRN2Q96FV2 425 aa20.78■□□□□ 0.92
CLN3-219ENST00000565778 COQ10AQ96MF6 247 aa20.78■□□□□ 0.92
CLN3-219ENST00000565778 POLR1EQ9GZS1 481 aaKnown RBP20.78■□□□□ 0.92
CLN3-219ENST00000565778 HAUS2Q9NVX0 235 aa20.78■□□□□ 0.92
CLN3-219ENST00000565778 MOSPD1Q9UJG1 213 aa20.78■□□□□ 0.92
CLN3-219ENST00000565778 PADI4Q9UM07 663 aa20.78■□□□□ 0.92
CLN3-219ENST00000565778 LHX6Q9UPM6 363 aa20.78■□□□□ 0.92
CLN3-219ENST00000565778 GPSM3Q9Y4H4 160 aa20.78■□□□□ 0.92
CLN3-219ENST00000565778 TTLL3Q9Y4R7 772 aa20.78■□□□□ 0.92
CLN3-219ENST00000565778 RAI2Q9Y5P3 530 aa20.78■□□□□ 0.92
CLN3-219ENST00000565778 KNTC1P50748 2209 aa20.78■□□□□ 0.92
CLN3-219ENST00000565778 TMEM202A6NGA9 273 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 HEXIM1O94992 359 aaKnown RBP20.77■□□□□ 0.92
CLN3-219ENST00000565778 CELA2BP08218 269 aaPredicted RBP20.77■□□□□ 0.92
CLN3-219ENST00000565778 KRT10P13645 584 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 CCNB1P14635 433 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 CTPS1P17812 591 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 GM2AP17900 193 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 MX2P20592 715 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 CES1P23141 567 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 TRIM23P36406 574 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 GBE1Q04446 702 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 ARHGEF7Q14155 803 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 CNGA3Q16281 694 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 CDCP2Q5VXM1 449 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 LVRNQ6Q4G3 990 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 NYAP1Q6ZVC0 841 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 GKN2Q86XP6 184 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 RHOT2Q8IXI1 618 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 SLC35F3Q8IY50 421 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 SDR16C5Q8N3Y7 309 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 PQLC3Q8N755 202 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 LRRN4Q8WUT4 740 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 MAML1Q92585 1016 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 FAF2Q96CS3 445 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 TSGA13Q96PP4 275 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 RNF157Q96PX1 679 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 DEPDC7Q96QD5 511 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 TRIM5Q9C035 493 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 KCTD5Q9NXV2 234 aa20.77■□□□□ 0.92
CLN3-219ENST00000565778 LRRD1A4D1F6 860 aa20.76■□□□□ 0.91
CLN3-219ENST00000565778 PDE2AO00408 941 aaPredicted RBP20.76■□□□□ 0.91
CLN3-219ENST00000565778 PDHA1P08559 390 aa20.76■□□□□ 0.91
CLN3-219ENST00000565778 HOXC4P09017 264 aaPredicted RBP20.76■□□□□ 0.91
CLN3-219ENST00000565778 TGM2P21980 687 aa20.76■□□□□ 0.91
CLN3-219ENST00000565778 EPHB1P54762 984 aa20.76■□□□□ 0.91
CLN3-219ENST00000565778 KIAA1024LP59773 190 aa20.76■□□□□ 0.91
CLN3-219ENST00000565778 SLC10A2Q12908 348 aaPredicted RBP20.76■□□□□ 0.91
CLN3-219ENST00000565778 PTPRRQ15256 657 aa20.76■□□□□ 0.91
CLN3-219ENST00000565778 ODF2Q5BJF6 829 aa20.76■□□□□ 0.91
CLN3-219ENST00000565778 USP45Q70EL2 814 aa20.76■□□□□ 0.91
CLN3-219ENST00000565778 HSD11B1LQ7Z5J1 315 aa20.76■□□□□ 0.91
CLN3-219ENST00000565778 TPCN2Q8NHX9 752 aa20.76■□□□□ 0.91
CLN3-219ENST00000565778 PIH1D2Q8WWB5 315 aa20.76■□□□□ 0.91
CLN3-219ENST00000565778 OR1E3Q8WZA6 343 aa20.76■□□□□ 0.91
CLN3-219ENST00000565778 NUS1Q96E22 293 aa20.76■□□□□ 0.91
CLN3-219ENST00000565778 DCBLD2Q96PD2 775 aa20.76■□□□□ 0.91
CLN3-219ENST00000565778 LGR4Q9BXB1 951 aa20.76■□□□□ 0.91
CLN3-219ENST00000565778 MAK16Q9BXY0 300 aaKnown RBP20.76■□□□□ 0.91
CLN3-219ENST00000565778 WDR26Q9H7D7 661 aa20.76■□□□□ 0.91
CLN3-219ENST00000565778 SIRPGQ9P1W8 387 aa20.76■□□□□ 0.91
CLN3-219ENST00000565778 GPR34Q9UPC5 381 aa20.76■□□□□ 0.91
CLN3-219ENST00000565778 CFAP47Q6ZTR5 3102 aa20.76■□□□□ 0.91
CLN3-219ENST00000565778 NPIPB15A6NHN6 443 aaPredicted RBP20.75■□□□□ 0.91
CLN3-219ENST00000565778 CSO75390 466 aaKnown RBP20.75■□□□□ 0.91
CLN3-219ENST00000565778 ETV3P41162 512 aa20.75■□□□□ 0.91
CLN3-219ENST00000565778 DSC2Q02487 901 aa20.75■□□□□ 0.91
CLN3-219ENST00000565778 TBX2Q13207 712 aaPredicted RBP20.75■□□□□ 0.91
CLN3-219ENST00000565778 PERM1Q5SV97 790 aa20.75■□□□□ 0.91
CLN3-219ENST00000565778 CRTC1Q6UUV9 634 aa20.75■□□□□ 0.91
CLN3-219ENST00000565778 CBARPQ8N350 705 aaPredicted RBP20.75■□□□□ 0.91
CLN3-219ENST00000565778 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.75■□□□□ 0.91
CLN3-219ENST00000565778 NAT6Q93015 286 aa20.75■□□□□ 0.91
CLN3-219ENST00000565778 PDXPQ96GD0 296 aa20.75■□□□□ 0.91
CLN3-219ENST00000565778 ZNF830Q96NB3 372 aaPredicted RBP20.75■□□□□ 0.91
CLN3-219ENST00000565778 ANP32EQ9BTT0 268 aa20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms