RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 FOXR1Q6PIV2 292 aa18.79■□□□□ 0.6
CLN3-218ENST00000565688 TMCO3Q6UWJ1 677 aa18.79■□□□□ 0.6
CLN3-218ENST00000565688 BBS5Q8N3I7 341 aa18.79■□□□□ 0.6
CLN3-218ENST00000565688 PDXPQ96GD0 296 aa18.79■□□□□ 0.6
CLN3-218ENST00000565688 STRADBQ9C0K7 418 aa18.79■□□□□ 0.6
CLN3-218ENST00000565688 WDR26Q9H7D7 661 aa18.79■□□□□ 0.6
CLN3-218ENST00000565688 KCTD5Q9NXV2 234 aa18.79■□□□□ 0.6
CLN3-218ENST00000565688 MYO1AQ9UBC5 1043 aa18.79■□□□□ 0.6
CLN3-218ENST00000565688 TMEM202A6NGA9 273 aa18.78■□□□□ 0.6
CLN3-218ENST00000565688 D6RAR5 112 aa18.78■□□□□ 0.6
CLN3-218ENST00000565688 HTRA2O43464 458 aaPredicted RBP18.78■□□□□ 0.6
CLN3-218ENST00000565688 TNFSF15O95150 251 aa18.78■□□□□ 0.6
CLN3-218ENST00000565688 ITGA2BP08514 1039 aa18.78■□□□□ 0.6
CLN3-218ENST00000565688 PIGHQ14442 188 aaPredicted RBP18.78■□□□□ 0.6
CLN3-218ENST00000565688 ACOX1Q15067 660 aa18.78■□□□□ 0.6
CLN3-218ENST00000565688 TSR1Q2NL82 804 aaKnown RBP18.78■□□□□ 0.6
CLN3-218ENST00000565688 FIGNQ5HY92 759 aa18.78■□□□□ 0.6
CLN3-218ENST00000565688 PNCKQ6P2M8 343 aa18.78■□□□□ 0.6
CLN3-218ENST00000565688 OGFOD3Q6PK18 319 aa18.78■□□□□ 0.6
CLN3-218ENST00000565688 POLNQ7Z5Q5 900 aa18.78■□□□□ 0.6
CLN3-218ENST00000565688 TAF8Q7Z7C8 310 aa18.78■□□□□ 0.6
CLN3-218ENST00000565688 CLEC14AQ86T13 490 aa18.78■□□□□ 0.6
CLN3-218ENST00000565688 GPR156Q8NFN8 814 aa18.78■□□□□ 0.6
CLN3-218ENST00000565688 OR1E3Q8WZA6 343 aa18.78■□□□□ 0.6
CLN3-218ENST00000565688 NAP1L5Q96NT1 182 aaPredicted RBP18.78■□□□□ 0.6
CLN3-218ENST00000565688 CPNE5Q9HCH3 593 aa18.78■□□□□ 0.6
CLN3-218ENST00000565688 FGF22Q9HCT0 170 aa18.78■□□□□ 0.6
CLN3-218ENST00000565688 RABGEF1Q9UJ41 708 aa18.78■□□□□ 0.6
CLN3-218ENST00000565688 SSUH2Q9Y2M2 353 aa18.78■□□□□ 0.6
CLN3-218ENST00000565688 BZW2Q9Y6E2 419 aaKnown RBP18.78■□□□□ 0.6
CLN3-218ENST00000565688 LRP4O75096 1905 aa18.78■□□□□ 0.6
CLN3-218ENST00000565688 ANKRD36A6QL64 1941 aa18.77■□□□□ 0.6
CLN3-218ENST00000565688 CAPN8A6NHC0 703 aa18.77■□□□□ 0.6
CLN3-218ENST00000565688 SERPINC1P01008 464 aa18.77■□□□□ 0.6
CLN3-218ENST00000565688 PRB1P04280 392 aa18.77■□□□□ 0.6
CLN3-218ENST00000565688 RPLP0P05388 317 aaKnown RBP18.77■□□□□ 0.6
CLN3-218ENST00000565688 SKILP12757 684 aa18.77■□□□□ 0.6
CLN3-218ENST00000565688 PNLIPP16233 465 aa18.77■□□□□ 0.6
CLN3-218ENST00000565688 GLB1P16278 677 aa18.77■□□□□ 0.6
CLN3-218ENST00000565688 IL1R2P27930 398 aa18.77■□□□□ 0.6
CLN3-218ENST00000565688 CCL7P80098 99 aa18.77■□□□□ 0.6
CLN3-218ENST00000565688 VAC14Q08AM6 782 aa18.77■□□□□ 0.6
CLN3-218ENST00000565688 NR1I3Q14994 352 aa18.77■□□□□ 0.6
CLN3-218ENST00000565688 RALGPS1Q5JS13 557 aa18.77■□□□□ 0.6
CLN3-218ENST00000565688 ARHGAP40Q5TG30 622 aa18.77■□□□□ 0.6
CLN3-218ENST00000565688 TP53INP2Q8IXH6 220 aa18.77■□□□□ 0.6
CLN3-218ENST00000565688 FAM46DQ8NEK8 389 aa18.77■□□□□ 0.6
CLN3-218ENST00000565688 NSMCE1Q8WV22 266 aa18.77■□□□□ 0.6
CLN3-218ENST00000565688 SNRNP27Q8WVK2 155 aaKnown RBP18.77■□□□□ 0.6
CLN3-218ENST00000565688 TEKT4Q8WW24 435 aa18.77■□□□□ 0.6
CLN3-218ENST00000565688 HSPH1Q92598 858 aa18.77■□□□□ 0.6
CLN3-218ENST00000565688 WBP1Q96G27 269 aa18.77■□□□□ 0.6
CLN3-218ENST00000565688 TMEM74Q96NL1 305 aa18.77■□□□□ 0.6
CLN3-218ENST00000565688 CSPG4P5Q96PW8 444 aa18.77■□□□□ 0.6
CLN3-218ENST00000565688 NUDCD1Q96RS6 583 aa18.77■□□□□ 0.6
CLN3-218ENST00000565688 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.77■□□□□ 0.6
CLN3-218ENST00000565688 B4GALT6Q9UBX8 382 aa18.77■□□□□ 0.6
CLN3-218ENST00000565688 APPL1Q9UKG1 709 aa18.77■□□□□ 0.6
CLN3-218ENST00000565688 A8MX80 341 aa18.76■□□□□ 0.59
CLN3-218ENST00000565688 PLD2O14939 933 aa18.76■□□□□ 0.59
CLN3-218ENST00000565688 CASC3O15234 703 aaKnown RBP18.76■□□□□ 0.59
CLN3-218ENST00000565688 C1QL1O75973 258 aa18.76■□□□□ 0.59
CLN3-218ENST00000565688 PEX11BO96011 259 aa18.76■□□□□ 0.59
CLN3-218ENST00000565688 GM2AP17900 193 aa18.76■□□□□ 0.59
CLN3-218ENST00000565688 AMPD1P23109 780 aa18.76■□□□□ 0.59
CLN3-218ENST00000565688 SERPINB6P35237 376 aa18.76■□□□□ 0.59
CLN3-218ENST00000565688 INHBCP55103 352 aa18.76■□□□□ 0.59
CLN3-218ENST00000565688 SMTNL2Q2TAL5 461 aa18.76■□□□□ 0.59
CLN3-218ENST00000565688 CERCAMQ5T4B2 595 aa18.76■□□□□ 0.59
CLN3-218ENST00000565688 KCTD16Q68DU8 428 aa18.76■□□□□ 0.59
CLN3-218ENST00000565688 NYAP1Q6ZVC0 841 aa18.76■□□□□ 0.59
CLN3-218ENST00000565688 RAB11FIP2Q7L804 512 aa18.76■□□□□ 0.59
CLN3-218ENST00000565688 CCNJLQ8IV13 435 aa18.76■□□□□ 0.59
CLN3-218ENST00000565688 ATPAF2Q8N5M1 289 aa18.76■□□□□ 0.59
CLN3-218ENST00000565688 PDCD6IPQ8WUM4 868 aaKnown RBP18.76■□□□□ 0.59
CLN3-218ENST00000565688 SYN2Q92777 582 aaPredicted RBP18.76■□□□□ 0.59
CLN3-218ENST00000565688 NUS1Q96E22 293 aa18.76■□□□□ 0.59
CLN3-218ENST00000565688 COQ10AQ96MF6 247 aa18.76■□□□□ 0.59
CLN3-218ENST00000565688 NSMCE3Q96MG7 304 aa18.76■□□□□ 0.59
CLN3-218ENST00000565688 MGME1Q9BQP7 344 aa18.76■□□□□ 0.59
CLN3-218ENST00000565688 LRRN3Q9H3W5 708 aa18.76■□□□□ 0.59
CLN3-218ENST00000565688 EPB41L5Q9HCM4 733 aa18.76■□□□□ 0.59
CLN3-218ENST00000565688 CYP4F12Q9HCS2 524 aa18.76■□□□□ 0.59
CLN3-218ENST00000565688 PCDHGC4Q9Y5F7 938 aa18.76■□□□□ 0.59
CLN3-218ENST00000565688 A0A1W2PQM1 296 aa18.75■□□□□ 0.59
CLN3-218ENST00000565688 PMS2P1A4D2B8 440 aa18.75■□□□□ 0.59
CLN3-218ENST00000565688 MAFKO60675 156 aa18.75■□□□□ 0.59
CLN3-218ENST00000565688 CPP00450 1065 aa18.75■□□□□ 0.59
CLN3-218ENST00000565688 RARAP10276 462 aa18.75■□□□□ 0.59
CLN3-218ENST00000565688 MYCLP1P12525 358 aaPredicted RBP18.75■□□□□ 0.59
CLN3-218ENST00000565688 CR2P20023 1033 aa18.75■□□□□ 0.59
CLN3-218ENST00000565688 CCKBRP32239 447 aa18.75■□□□□ 0.59
CLN3-218ENST00000565688 VIPR1P32241 457 aa18.75■□□□□ 0.59
CLN3-218ENST00000565688 CDH6P55285 790 aa18.75■□□□□ 0.59
CLN3-218ENST00000565688 C14orf28Q4W4Y0 310 aa18.75■□□□□ 0.59
CLN3-218ENST00000565688 TAF1BQ53T94 588 aaPredicted RBP18.75■□□□□ 0.59
CLN3-218ENST00000565688 TDRD12Q587J7 1177 aaKnown RBP18.75■□□□□ 0.59
CLN3-218ENST00000565688 B3GNT8Q7Z7M8 397 aa18.75■□□□□ 0.59
CLN3-218ENST00000565688 LRRC49Q8IUZ0 686 aa18.75■□□□□ 0.59
CLN3-218ENST00000565688 FBXO39Q8N4B4 442 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms