RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 SLC13A2Q13183 592 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 ZBTB6Q15916 424 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 RAB6CQ53S08 254 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 SH3PXD2AQ5TCZ1 1133 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 PCDH20Q8N6Y1 951 aaKnown RBP13.35□□□□□ -0.27
CLK3-206ENST00000562078 OSCP1Q8WVF1 389 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 TXNDC15Q96J42 360 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 PEBP4Q96S96 227 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 EMILIN2Q9BXX0 1053 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 B3GNT4Q9C0J1 378 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 WDR12Q9GZL7 423 aaKnown RBP13.35□□□□□ -0.27
CLK3-206ENST00000562078 RAB6CQ9H0N0 254 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 KIAA1257Q9ULG3 409 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 TRIM38O00635 465 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 ASNA1O43681 348 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 INHAP05111 366 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 KDELR1P24390 212 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 KRT6CP48668 564 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 NUMBP49757 651 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 TRIM25Q14258 630 aaKnown RBP13.35□□□□□ -0.27
CLK3-206ENST00000562078 KCNA10Q16322 511 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 CDO1Q16878 200 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 C15orf59Q2T9L4 293 aaPredicted RBP13.35□□□□□ -0.27
CLK3-206ENST00000562078 FAXCQ5TGI0 409 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 OSTM1Q86WC4 334 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 RAB2BQ8WUD1 216 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 MOCOSQ96EN8 888 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 LPIN3Q9BQK8 851 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 SOX17Q9H6I2 414 aaPredicted RBP13.35□□□□□ -0.27
CLK3-206ENST00000562078 GPN2Q9H9Y4 310 aaPredicted RBP13.35□□□□□ -0.27
CLK3-206ENST00000562078 ACSS2Q9NR19 701 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 USP18Q9UMW8 372 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 CEP350Q5VT06 3117 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 FAM149AA5PLN7 773 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 M0QX08 132 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 IDH3BO43837 385 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 GPD1P21695 349 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 ZNF143P52747 638 aaPredicted RBP13.34□□□□□ -0.27
CLK3-206ENST00000562078 ECT2LQ008S8 904 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 KCNJ11Q14654 390 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 FXNQ16595 210 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 SMU1Q2TAY7 513 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 SLC36A3Q495N2 470 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 CDONQ4KMG0 1287 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 C9orf57Q5W0N0 161 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 PMF1Q6P1K2 205 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 UNC5AQ6ZN44 842 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 EPHX4Q8IUS5 362 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 KCTD6Q8NC69 237 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 SLAIN1Q8ND83 568 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 OR6B3Q8NGW1 331 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 FAF2Q96CS3 445 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 CALN1Q9BXU9 219 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 LHPPQ9H008 270 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 DPEP3Q9H4B8 488 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 FAM124BQ9H5Z6 455 aaPredicted RBP13.34□□□□□ -0.27
CLK3-206ENST00000562078 AP4E1Q9UPM8 1137 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 UGT2A1Q9Y4X1 527 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 BRCA2P51587 3418 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 FRMPD3Q5JV73 1810 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 C2CD4BA6NLJ0 364 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 AP3B1O00203 1094 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 ARHGAP33O14559 1287 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 TPP1O14773 563 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 CPNE6O95741 557 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 ALDOAP04075 364 aaKnown RBP13.34□□□□□ -0.27
CLK3-206ENST00000562078 PDGFRAP16234 1089 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 LEPRP48357 1165 aaKnown RBP13.34□□□□□ -0.27
CLK3-206ENST00000562078 ZNF135P52742 658 aaPredicted RBP13.34□□□□□ -0.27
CLK3-206ENST00000562078 PLCL1Q15111 1095 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 ABRAXAS1Q6UWZ7 409 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 ALKAL1Q6UXT8 129 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 NAPRTQ6XQN6 538 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 BBS12Q6ZW61 710 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 RNF180Q86T96 592 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 LRRC52Q8N7C0 313 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 CMASQ8NFW8 434 aaPredicted RBP13.34□□□□□ -0.27
CLK3-206ENST00000562078 RXFP2Q8WXD0 754 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 LPGAT1Q92604 370 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 APBB2Q92870 758 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 CNDP1Q96KN2 507 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 TUBA1CQ9BQE3 449 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 CNPY3Q9BT09 278 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 RNF39Q9H2S5 420 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 GOLGA2P5Q9HBQ8 144 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 ZNF358Q9NW07 568 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 ASNSD1Q9NWL6 643 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 MTRRQ9UBK8 725 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 ANGPTL3Q9Y5C1 460 aa13.34□□□□□ -0.27
CLK3-206ENST00000562078 FAM172BPA6NC97 362 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 SNPHO15079 494 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 SEC14L2O76054 403 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 HSPA4LO95757 839 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 TRUB2O95900 331 aaKnown RBP13.33□□□□□ -0.28
CLK3-206ENST00000562078 EEF1B2P24534 225 aaKnown RBP13.33□□□□□ -0.28
CLK3-206ENST00000562078 SLC7A1P30825 629 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 PCBP1Q15365 356 aaKnown RBP eCLIP13.33□□□□□ -0.28
CLK3-206ENST00000562078 SMAD1Q15797 465 aaKnown RBP13.33□□□□□ -0.28
CLK3-206ENST00000562078 SOWAHAQ2M3V2 549 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 PPM1JQ5JR12 505 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms