RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 LRCH4O75427 683 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 RNF8O76064 485 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 RPLP0P05388 317 aaKnown RBP11.68□□□□□ -0.54
USP3-220ENST00000561381 ELFN1P0C7U0 828 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 HGFP14210 728 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 TCF4P15884 667 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 IL1R2P27930 398 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 ANP32AP39687 249 aaKnown RBP11.68□□□□□ -0.54
USP3-220ENST00000561381 UCNP55089 124 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 IL10RBQ08334 325 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 VAC14Q08AM6 782 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 SLC10A7Q0GE19 358 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 CLN3Q13286 438 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 ASIC2Q16515 512 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 ANO6Q4KMQ2 910 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 TAF1BQ53T94 588 aaPredicted RBP11.68□□□□□ -0.54
USP3-220ENST00000561381 DPPA4Q7L190 304 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 LAPTM4BQ86VI4 370 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 PAF1Q8N7H5 531 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 Q8N9G6 341 aaPredicted RBP11.68□□□□□ -0.54
USP3-220ENST00000561381 ANKK1Q8NFD2 765 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 OR56A4Q8NGH8 313 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 CCL4L1Q8NHW4 92 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 WDR48Q8TAF3 677 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 ZNF653Q96CK0 615 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 GFM1Q96RP9 751 aaKnown RBP11.68□□□□□ -0.54
USP3-220ENST00000561381 RBM15Q96T37 977 aaKnown RBP eCLIP11.68□□□□□ -0.54
USP3-220ENST00000561381 EIF3CQ99613 913 aaKnown RBP11.68□□□□□ -0.54
USP3-220ENST00000561381 SEMA4CQ9C0C4 833 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 EPB41L5Q9HCM4 733 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 WDR70Q9NW82 654 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 TMEM63CQ9P1W3 806 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 MYO1AQ9UBC5 1043 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 MYO6Q9UM54 1294 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 DGKBQ9Y6T7 804 aa11.68□□□□□ -0.54
USP3-220ENST00000561381 ARHGEF17Q96PE2 2063 aaPredicted RBP11.67□□□□□ -0.54
USP3-220ENST00000561381 CFAP69A5D8W1 941 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 D6RAR5 112 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 CACNB4O00305 520 aaPredicted RBP11.67□□□□□ -0.54
USP3-220ENST00000561381 NOBOXO60393 691 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 PEX11BO96011 259 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 SKILP12757 684 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 PLA2G2AP14555 144 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 AMPD1P23109 780 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 KIAA1024LP59773 190 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 RHDQ02161 417 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 CFHR1Q03591 330 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 NSUN2Q08J23 767 aaKnown RBP eCLIP11.67□□□□□ -0.54
USP3-220ENST00000561381 RFTN1Q14699 578 aaPredicted RBP11.67□□□□□ -0.54
USP3-220ENST00000561381 LBRQ14739 615 aaKnown RBP11.67□□□□□ -0.54
USP3-220ENST00000561381 PTPRRQ15256 657 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 SMTNL2Q2TAL5 461 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 KIAA1614Q5VZ46 1190 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 PNCKQ6P2M8 343 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 RAB11FIP2Q7L804 512 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 TAF8Q7Z7C8 310 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 CLEC14AQ86T13 490 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 PGBD5Q8N414 524 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 FBXO39Q8N4B4 442 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 ARL14Q8N4G2 192 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 FAM46DQ8NEK8 389 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 GPR156Q8NFN8 814 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 FNIP1Q8TF40 1166 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 TTC9Q92623 222 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 LIN37Q96GY3 246 aaPredicted RBP11.67□□□□□ -0.54
USP3-220ENST00000561381 NAP1L5Q96NT1 182 aaPredicted RBP11.67□□□□□ -0.54
USP3-220ENST00000561381 TMEM168Q9H0V1 697 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 LRRN3Q9H3W5 708 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 CYP4F12Q9HCS2 524 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 ETNK2Q9NVF9 386 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 AIPL1Q9NZN9 384 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 B4GALT6Q9UBX8 382 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 ATXN7L1Q9ULK2 861 aaPredicted RBP11.67□□□□□ -0.54
USP3-220ENST00000561381 PCDHGC4Q9Y5F7 938 aa11.67□□□□□ -0.54
USP3-220ENST00000561381 ATMQ13315 3056 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 AHCTF1Q8WYP5 2266 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 B4DGG1 531 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 K7ENP7 123 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 PLD2O14939 933 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 EFSO43281 561 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 ITGA2BP08514 1039 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 KRT10P13645 584 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 SLC5A2P31639 672 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 UGT1A5P35504 534 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 TRIM23P36406 574 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 HCAR3P49019 387 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 INHBCP55103 352 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 AP1S1P61966 158 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 KLHL30Q0D2K2 578 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 SRSF6Q13247 344 aaKnown RBP11.66□□□□□ -0.54
USP3-220ENST00000561381 LY6DQ14210 128 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 ACOX1Q15067 660 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 CNGA3Q16281 694 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 ZSCAN23Q3MJ62 389 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 TMCO4Q5TGY1 634 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 TXNRD3NBQ6F5E7 133 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 PPP1R2P3Q6NXS1 205 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 INO80CQ6PI98 192 aaPredicted RBP11.66□□□□□ -0.54
USP3-220ENST00000561381 OGFOD3Q6PK18 319 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 TMPRSS9Q7Z410 1059 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms