RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	PRR34	Q9NV39	138 aa		2.57	□□□□□ -2
SPG11-222	ENST00000560435	C2orf42	Q9NWW7	574 aa		2.57	□□□□□ -2
SPG11-222	ENST00000560435	TINAG	Q9UJW2	476 aa		2.57	□□□□□ -2
SPG11-222	ENST00000560435	TP53TG3	Q9ULZ0	132 aa		2.57	□□□□□ -2
SPG11-222	ENST00000560435		A0A0U1RQF3	1178 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435	GOLGA6L9	A6NEM1	432 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435		A8MU10	97 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435		H7C423	109 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435	RTL8C	O15255	209 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435	SEPT4	O43236	478 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435	WDR1	O75083	606 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435	MTA2	O94776	668 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435	CSF1	P09603	554 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435	GATA1	P15976	413 aa	Predicted RBP	2.56	□□□□□ -2
SPG11-222	ENST00000560435	DPEP1	P16444	411 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435	ZNF8	P17098	575 aa	Predicted RBP	2.56	□□□□□ -2
SPG11-222	ENST00000560435	CLCNKA	P51800	687 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435	ITGA9	Q13797	1035 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435	NEDD9	Q14511	834 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435	LONRF1	Q17RB8	773 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435	LURAP1L	Q8IV03	231 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435	FOXRED2	Q8IWF2	684 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435	DNAAF1	Q8NEP3	725 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435	PARD3B	Q8TEW8	1205 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435	DUSP19	Q8WTR2	217 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435	RND1	Q92730	232 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435	VGLL1	Q99990	258 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435	NPL	Q9BXD5	320 aa	Predicted RBP	2.56	□□□□□ -2
SPG11-222	ENST00000560435	PABPC3	Q9H361	631 aa	Known RBP	2.56	□□□□□ -2
SPG11-222	ENST00000560435	PLEKHA2	Q9HB19	425 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435	CISD1	Q9NZ45	108 aa	Known RBP	2.56	□□□□□ -2
SPG11-222	ENST00000560435	KCND3	Q9UK17	655 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435	DLGAP4	Q9Y2H0	992 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435	NFE2L3	Q9Y4A8	694 aa		2.56	□□□□□ -2
SPG11-222	ENST00000560435		A0A087X002	238 aa		2.55	□□□□□ -2
SPG11-222	ENST00000560435	PRKN	O60260	465 aa	Predicted RBP	2.55	□□□□□ -2
SPG11-222	ENST00000560435	IGHV4-39	P01824	125 aa		2.55	□□□□□ -2
SPG11-222	ENST00000560435	HOXC8	P31273	242 aa		2.55	□□□□□ -2
SPG11-222	ENST00000560435	WDR38	Q5JTN6	314 aa		2.55	□□□□□ -2
SPG11-222	ENST00000560435	SH2D4B	Q5SQS7	431 aa		2.55	□□□□□ -2
SPG11-222	ENST00000560435	RGMB	Q6NW40	437 aa		2.55	□□□□□ -2
SPG11-222	ENST00000560435	RASGRP2	Q7LDG7	609 aa		2.55	□□□□□ -2
SPG11-222	ENST00000560435	C11orf96	Q7Z7L8	435 aa		2.55	□□□□□ -2
SPG11-222	ENST00000560435	CHD1L	Q86WJ1	897 aa		2.55	□□□□□ -2
SPG11-222	ENST00000560435	STAMBPL1	Q96FJ0	436 aa		2.55	□□□□□ -2
SPG11-222	ENST00000560435	TMEM41A	Q96HV5	264 aa		2.55	□□□□□ -2
SPG11-222	ENST00000560435	CCDC138	Q96M89	665 aa		2.55	□□□□□ -2
SPG11-222	ENST00000560435	MYD88	Q99836	296 aa		2.55	□□□□□ -2
SPG11-222	ENST00000560435	SYT17	Q9BSW7	474 aa		2.55	□□□□□ -2
SPG11-222	ENST00000560435	HAUS8	Q9BT25	410 aa		2.55	□□□□□ -2
SPG11-222	ENST00000560435	CABLES2	Q9BTV7	478 aa		2.55	□□□□□ -2
SPG11-222	ENST00000560435	POLR3C	Q9BUI4	534 aa	Predicted RBP	2.55	□□□□□ -2
SPG11-222	ENST00000560435	CTDSP1	Q9GZU7	261 aa		2.55	□□□□□ -2
SPG11-222	ENST00000560435	UPF2	Q9HAU5	1272 aa	Known RBP	2.55	□□□□□ -2
SPG11-222	ENST00000560435	C2CD2	Q9Y426	696 aa		2.55	□□□□□ -2
SPG11-222	ENST00000560435	A3GALT2	U3KPV4	340 aa		2.55	□□□□□ -2
SPG11-222	ENST00000560435	PRRC2A	P48634	2157 aa	Known RBP	2.54	□□□□□ -2
SPG11-222	ENST00000560435	ADGRF5	Q8IZF2	1346 aa		2.54	□□□□□ -2
SPG11-222	ENST00000560435	CBY3	A6NI87	242 aa		2.54	□□□□□ -2
SPG11-222	ENST00000560435	HSPB2	A8KAH6	182 aa		2.54	□□□□□ -2
SPG11-222	ENST00000560435	KLRF2	D3W0D1	207 aa		2.54	□□□□□ -2
SPG11-222	ENST00000560435	DCX	O43602	365 aa		2.54	□□□□□ -2
SPG11-222	ENST00000560435	MYOD1	P15172	320 aa		2.54	□□□□□ -2
SPG11-222	ENST00000560435	ABCB4	P21439	1286 aa		2.54	□□□□□ -2
SPG11-222	ENST00000560435	CD72	P21854	359 aa		2.54	□□□□□ -2
SPG11-222	ENST00000560435	EFNA5	P52803	228 aa		2.54	□□□□□ -2
SPG11-222	ENST00000560435	EEF1A1	P68104	462 aa	Known RBP	2.54	□□□□□ -2
SPG11-222	ENST00000560435	TNFAIP2	Q03169	654 aa		2.54	□□□□□ -2
SPG11-222	ENST00000560435	STARD3	Q14849	445 aa		2.54	□□□□□ -2
SPG11-222	ENST00000560435	HSPB2	Q16082	182 aa		2.54	□□□□□ -2
SPG11-222	ENST00000560435	EEF1A1P5	Q5VTE0	462 aa		2.54	□□□□□ -2
SPG11-222	ENST00000560435	KLHL17	Q6TDP4	642 aa		2.54	□□□□□ -2
SPG11-222	ENST00000560435	IL20RB	Q6UXL0	311 aa		2.54	□□□□□ -2
SPG11-222	ENST00000560435	ASB18	Q6ZVZ8	466 aa		2.54	□□□□□ -2
SPG11-222	ENST00000560435	PRSS45	Q7RTY3	260 aa		2.54	□□□□□ -2
SPG11-222	ENST00000560435	WDR75	Q8IWA0	830 aa	Known RBP	2.54	□□□□□ -2
SPG11-222	ENST00000560435	GJC3	Q8NFK1	279 aa		2.54	□□□□□ -2
SPG11-222	ENST00000560435	GDPD5	Q8WTR4	605 aa		2.54	□□□□□ -2
SPG11-222	ENST00000560435	HSPH1	Q92598	858 aa		2.54	□□□□□ -2
SPG11-222	ENST00000560435	TFB2M	Q9H5Q4	396 aa	Known RBP	2.54	□□□□□ -2
SPG11-222	ENST00000560435	FGF22	Q9HCT0	170 aa		2.54	□□□□□ -2
SPG11-222	ENST00000560435	OBP2B	Q9NPH6	170 aa		2.54	□□□□□ -2
SPG11-222	ENST00000560435	ZHX2	Q9Y6X8	837 aa		2.54	□□□□□ -2
SPG11-222	ENST00000560435	IGLV5-45	A0A087WSX0	123 aa		2.53	□□□□□ -2
SPG11-222	ENST00000560435		A0A0G2JLW4	131 aa		2.53	□□□□□ -2
SPG11-222	ENST00000560435	TRIM27	P14373	513 aa		2.53	□□□□□ -2
SPG11-222	ENST00000560435	TEC	P42680	631 aa		2.53	□□□□□ -2
SPG11-222	ENST00000560435	RUNX1T1	Q06455	604 aa		2.53	□□□□□ -2
SPG11-222	ENST00000560435	GOLGA8F	Q08AF8	430 aa		2.53	□□□□□ -2
SPG11-222	ENST00000560435	GTF2H2	Q13888	395 aa		2.53	□□□□□ -2
SPG11-222	ENST00000560435	RUNX2	Q13950	521 aa		2.53	□□□□□ -2
SPG11-222	ENST00000560435	TMEM187	Q14656	261 aa		2.53	□□□□□ -2
SPG11-222	ENST00000560435	UGP2	Q16851	508 aa		2.53	□□□□□ -2
SPG11-222	ENST00000560435	GTF2H2C	Q6P1K8	395 aa		2.53	□□□□□ -2
SPG11-222	ENST00000560435	TRPT1	Q86TN4	253 aa	Known RBP	2.53	□□□□□ -2
SPG11-222	ENST00000560435	CCDC117	Q8IWD4	279 aa	Predicted RBP	2.53	□□□□□ -2
SPG11-222	ENST00000560435	ZNF34	Q8IZ26	560 aa		2.53	□□□□□ -2
SPG11-222	ENST00000560435	DSEL	Q8IZU8	1212 aa		2.53	□□□□□ -2
SPG11-222	ENST00000560435	SCCPDH	Q8NBX0	429 aa		2.53	□□□□□ -2
SPG11-222	ENST00000560435	AGBL3	Q8NEM8	1001 aa		2.53	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 22 ms