RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 LONRF2Q1L5Z9 754 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 CCDC70Q6NSX1 233 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 LIPIQ6XZB0 460 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 GCNT7Q6ZNI0 430 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 CENPTQ96BT3 561 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 KLHDC7BQ96G42 594 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 FAM118BQ9BPY3 351 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 TMEM121Q9BTD3 319 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 MLPHQ9BV36 600 aaPredicted RBP13.04□□□□□ -0.32
NEDD8-208ENST00000560427 GDF3Q9NR23 364 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 DNAAF2Q9NVR5 837 aaKnown RBP13.04□□□□□ -0.32
NEDD8-208ENST00000560427 GOLGA6AQ9NYA3 693 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 SNX12Q9UMY4 172 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 LOC285095A0A1B0GVY8 99 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 TLR4O00206 839 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 WNT1P04628 370 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 ITGAVP06756 1048 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 ZNF883P0CG24 379 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 ITIH2P19823 946 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 HLA-DPA1P20036 260 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 LHCGRP22888 699 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 CXCR5P32302 372 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 ACTN2P35609 894 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 HNF1BP35680 557 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 WNT3AP56704 352 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 GNG11P61952 73 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 YPEL5P62699 121 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 SLC14A1Q13336 389 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 LRRC14Q15048 493 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 PARP6Q2NL67 630 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 KIF19Q2TAC6 998 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 KDELC1Q6UW63 502 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 ARHGEF18Q6ZSZ5 1173 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 KLHDC8BQ8IXV7 354 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 CBARPQ8N350 705 aaPredicted RBP13.03□□□□□ -0.32
NEDD8-208ENST00000560427 FAM71DQ8N9W8 422 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 TP53I13Q8NBR0 393 aaPredicted RBP13.03□□□□□ -0.32
NEDD8-208ENST00000560427 SPATA22Q8NHS9 363 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 ACTRT1Q8TDG2 376 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 ATG4AQ8WYN0 398 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 KLK6Q92876 244 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 RMDN1Q96DB5 314 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 OXNAD1Q96HP4 312 aaPredicted RBP13.03□□□□□ -0.32
NEDD8-208ENST00000560427 COQ10AQ96MF6 247 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 OSBPL9Q96SU4 736 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 FSD1LQ9BXM9 530 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 C10orf88Q9H8K7 445 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 MAGEE1Q9HCI5 957 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 GPR27Q9NS67 375 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 CDV3Q9UKY7 258 aaKnown RBP13.03□□□□□ -0.32
NEDD8-208ENST00000560427 DRG1Q9Y295 367 aaKnown RBP13.03□□□□□ -0.32
NEDD8-208ENST00000560427 PLXNA2O75051 1894 aa13.03□□□□□ -0.32
NEDD8-208ENST00000560427 PTPRZ1P23471 2315 aaPredicted RBP13.02□□□□□ -0.32
NEDD8-208ENST00000560427 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.02□□□□□ -0.33
NEDD8-208ENST00000560427 RGSL1A5PLK6 1076 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 PGRMC1O00264 195 aaKnown RBP13.02□□□□□ -0.33
NEDD8-208ENST00000560427 WNT9AO14904 365 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 RAD51BO15315 384 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 PMPCBO75439 489 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 RECQL5O94762 991 aaPredicted RBP13.02□□□□□ -0.33
NEDD8-208ENST00000560427 FGF1P05230 155 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 PYGLP06737 847 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 ALPIP09923 528 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 THEGLP0DJG4 465 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 CTPS1P17812 591 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 TEAD1P28347 426 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 IGFALSP35858 605 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 PFN3P60673 137 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 BNC1Q01954 994 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 MTM1Q13496 603 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 IRF4Q15306 451 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 PCSK7Q16549 785 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 ZNF423Q2M1K9 1284 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 WSCD2Q2TBF2 565 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 HS1BP3Q53T59 392 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 STPG1Q5TH74 334 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 LRRC66Q68CR7 880 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 ESRP1Q6NXG1 681 aaKnown RBP13.02□□□□□ -0.33
NEDD8-208ENST00000560427 CRTC1Q6UUV9 634 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 C4orf22Q6V702 233 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 ZNF765Q7L2R6 523 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 MINDY1Q8N5J2 469 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 CCDC110Q8TBZ0 833 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 C1orf54Q8WWF1 131 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 DTD2Q96FN9 168 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 MRGPRX2Q96LB1 330 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 BMFQ96LC9 184 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 ELF4Q99607 663 aaPredicted RBP13.02□□□□□ -0.33
NEDD8-208ENST00000560427 NAPGQ99747 312 aaPredicted RBP13.02□□□□□ -0.33
NEDD8-208ENST00000560427 MYOCQ99972 504 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 GTPBP2Q9BX10 602 aaKnown RBP13.02□□□□□ -0.33
NEDD8-208ENST00000560427 TRABDQ9H4I3 376 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 FZD3Q9NPG1 666 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 FEZ2Q9UHY8 353 aaPredicted RBP13.02□□□□□ -0.33
NEDD8-208ENST00000560427 ZNF148Q9UQR1 794 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 SNX11Q9Y5W9 270 aa13.02□□□□□ -0.33
NEDD8-208ENST00000560427 RALGAPA1Q6GYQ0 2036 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 GOLGA6L10A0A0M3HER8 536 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 CTAGE9A4FU28 777 aa13.01□□□□□ -0.33
NEDD8-208ENST00000560427 ERI2A8K979 691 aaKnown RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms