RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 FAM131BQ86XD5 332 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 KATNAL2Q8IYT4 538 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 STK40Q8N2I9 435 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 NIPA2Q8N8Q9 360 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 TMEM145Q8NBT3 493 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 WDR36Q8NI36 951 aaKnown RBP12.66□□□□□ -0.38
SHMT2-230ENST00000557427 JOSD2Q8TAC2 188 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 PTPRN2Q92932 1015 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 PGAP3Q96FM1 320 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-230ENST00000557427 FEM1AQ9BSK4 669 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 LRRC19Q9H756 370 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 MPP6Q9NZW5 540 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 DMTF1Q9Y222 760 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 RP1P56715 2156 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 CACNA1DQ01668 2161 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 GOLGA6BA6NDN3 693 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 PRAMEF26H0Y7S4 382 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 SCAMP1O15126 338 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 CLDN11O75508 207 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 SRPRAP08240 638 aaKnown RBP12.65□□□□□ -0.38
SHMT2-230ENST00000557427 FAM153BP0C7A2 387 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 RARAP10276 462 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 KRT3P12035 628 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 SDC4P31431 198 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 SLC5A2P31639 672 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 RFC1P35251 1148 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-230ENST00000557427 HSPA9P38646 679 aaKnown RBP12.65□□□□□ -0.38
SHMT2-230ENST00000557427 NNMTP40261 264 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 MLLT3P42568 568 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-230ENST00000557427 CDH4P55283 916 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 SLC12A1Q13621 1099 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 PIGHQ14442 188 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-230ENST00000557427 HLTFQ14527 1009 aaKnown RBP eCLIP12.65□□□□□ -0.38
SHMT2-230ENST00000557427 FAM153CQ494X1 144 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 ALFQ53S48 1182 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 ZNF542PQ5EBM4 170 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 DUPD1Q68J44 220 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 CXorf57Q6NSI4 855 aaKnown RBP12.65□□□□□ -0.38
SHMT2-230ENST00000557427 RBM44Q6ZP01 1051 aaKnown RBP12.65□□□□□ -0.38
SHMT2-230ENST00000557427 OR52K2Q8NGK3 314 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 EXD1Q8NHP7 514 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 FNIP1Q8TF40 1166 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 SLCO2A1Q92959 643 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 MAGOHBQ96A72 148 aaKnown RBP12.65□□□□□ -0.38
SHMT2-230ENST00000557427 C1orf74Q96LT6 269 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 GDAP1L1Q96MZ0 367 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 MYOCQ99972 504 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 ERP44Q9BS26 406 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 MAGEB5Q9BZ81 275 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 MUC3BQ9H195 1237 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 FAM153AQ9UHL3 310 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 VPS28Q9UK41 221 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 PCDHGA4Q9Y5G9 962 aa12.65□□□□□ -0.38
SHMT2-230ENST00000557427 ZFC3H1O60293 1989 aaKnown RBP12.65□□□□□ -0.38
SHMT2-230ENST00000557427 NYNRINQ9P2P1 1898 aaKnown RBP12.64□□□□□ -0.39
SHMT2-230ENST00000557427 FBN2P35556 2912 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 EDDM13A0A1B0GTR0 161 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 CPED1A4D0V7 1026 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 SIGLEC16A6NMB1 481 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 DRGXA6NNA5 263 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 AGPSO00116 658 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 PLRG1O43660 514 aaKnown RBP12.64□□□□□ -0.39
SHMT2-230ENST00000557427 SYF2O95926 243 aaKnown RBP12.64□□□□□ -0.39
SHMT2-230ENST00000557427 VAV1P15498 845 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 COILP38432 576 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-230ENST00000557427 PLK1P53350 603 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 OXCT1P55809 520 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 TAS2R40P59535 323 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 RPL7AP62424 266 aaKnown RBP12.64□□□□□ -0.39
SHMT2-230ENST00000557427 SULT2A1Q06520 285 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 TERF2Q15554 542 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 GLIPR1L2Q4G1C9 344 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 PERM1Q5SV97 790 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 DCUN1D2Q6PH85 259 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 CCDC137Q6PK04 289 aaKnown RBP12.64□□□□□ -0.39
SHMT2-230ENST00000557427 ARCQ7LC44 396 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 EFL1Q7Z2Z2 1120 aaKnown RBP12.64□□□□□ -0.39
SHMT2-230ENST00000557427 TFAP2DQ7Z6R9 452 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 TRIM69Q86WT6 500 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 JAMLQ86YT9 394 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 SLC22A18ASQ8N1D0 253 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 TSEN2Q8NCE0 465 aaKnown RBP12.64□□□□□ -0.39
SHMT2-230ENST00000557427 OR13H1Q8NG92 308 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 LRRC45Q96CN5 670 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 ALG14Q96F25 216 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 SH3GL2Q99962 352 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 FAM129AQ9BZQ8 928 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 USP29Q9HBJ7 922 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 LRRC4CQ9HCJ2 640 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 HOMER3Q9NSC5 361 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 PLEKHB1Q9UF11 243 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-230ENST00000557427 PCDHGA7Q9Y5G6 932 aa12.64□□□□□ -0.39
SHMT2-230ENST00000557427 CCDC187A0A096LP49 1063 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 EME2A4GXA9 379 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-230ENST00000557427 C2CD4BA6NLJ0 364 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 POLR3GO15318 223 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-230ENST00000557427 DAPK3O43293 454 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 BNIP3LO60238 219 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 ENDOD1O94919 500 aa12.63□□□□□ -0.39
SHMT2-230ENST00000557427 ADH1BP00325 375 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms