RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	KIAA0319L	Q8IZA0	1049 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	PLD6	Q8N2A8	252 aa	Known RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	CNTD1	Q8N815	330 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	SMYD1	Q8NB12	490 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	SPATA22	Q8NHS9	363 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	SLC35B2	Q8TB61	432 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	ENKUR	Q8TC29	256 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	TMIGD2	Q96BF3	282 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	SMARCD1	Q96GM5	515 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	RPRD1A	Q96P16	312 aa	Predicted RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	TRIM8	Q9BZR9	551 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	TOR3A	Q9H497	397 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	EXD2	Q9NVH0	621 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	ZNF222	Q9UK12	451 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	RIPK3	Q9Y572	518 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	TRIM17	Q9Y577	477 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	RAD54B	Q9Y620	910 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	ZNF99	A8MXY4	864 aa	Predicted RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005		F5H5T6	163 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	IRF6	O14896	467 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	AURKA	O14965	403 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	MED26	O95402	600 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	POMC	P01189	267 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	CAPN1	P07384	714 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	PIRT	P0C851	137 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	IDO1	P14902	403 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	IL7R	P16871	459 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	ZNF12	P17014	697 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	PTPN1	P18031	435 aa	Known RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	OR1G1	P47890	313 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	NDUFV1	P49821	464 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	ENTPD1	P49961	510 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	FKBP1A	P62942	108 aa	Known RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	ARHGEF7	Q14155	803 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	COLEC12	Q5KU26	742 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	CAMKK1	Q8N5S9	505 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	ANKRD52	Q8NB46	1076 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	WNT8B	Q93098	351 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	HDAC10	Q969S8	669 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	FCRL3	Q96P31	734 aa	Predicted RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	TSEN34	Q9BSV6	310 aa	Known RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	PNPLA8	Q9NP80	782 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	RASSF1	Q9NS23	344 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	MPP6	Q9NZW5	540 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	NENF	Q9UMX5	172 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	SESN1	Q9Y6P5	492 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	TOGARAM1	Q9Y4F4	1720 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005		H3BMM5	538 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	TADA2A	O75478	443 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	CYP7B1	O75881	506 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	FARP2	O94887	1054 aa	Predicted RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	CLIC3	O95833	236 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	PENK	P01210	267 aa	Predicted RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	C2	P06681	752 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	THRB	P10828	461 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	MYL4	P12829	197 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	YWHAQ	P27348	245 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	GSTM5	P46439	218 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	PRIM2	P49643	509 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	CLCN5	P51795	746 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	TSN	Q15631	228 aa	Known RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	ZBED5	Q49AG3	693 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	OGFRL1	Q5TC84	451 aa	Predicted RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	C9orf57	Q5W0N0	161 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	TAS1R3	Q7RTX0	852 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	TRIM69	Q86WT6	500 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	RBM12B	Q8IXT5	1001 aa	Known RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	CDYL2	Q8N8U2	506 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	SIDT2	Q8NBJ9	832 aa	Known RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	PHC3	Q8NDX5	983 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	SPPL2A	Q8TCT8	520 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	MYLPF	Q96A32	169 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	PPP1R14B	Q96C90	147 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	ASB9	Q96DX5	294 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	HOPX	Q9BPY8	73 aa	Predicted RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	PDZD7	Q9H5P4	517 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	SOX17	Q9H6I2	414 aa	Predicted RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	PARVB	Q9HBI1	364 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	TNFSF13B	Q9Y275	285 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	MYH7B	A7E2Y1	1941 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	TRAFD1	O14545	582 aa	Predicted RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	EI24	O14681	340 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	KLF11	O14901	512 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	ARPC2	O15144	300 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	STX7	O15400	261 aa	Known RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	CD3EAP	O15446	510 aa	Known RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	MSI1	O43347	362 aa	Known RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	NDUFB5	O43674	189 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	UGT2B11	O75310	529 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	IPO13	O94829	963 aa	Known RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	ADORA2A	P29274	412 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	HAL	P42357	657 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	RGS4	P49798	205 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	SPIB	Q01892	262 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	PDCD4	Q53EL6	469 aa	Known RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	RNASE12	Q5GAN4	147 aa	Known RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	GLYAT	Q6IB77	296 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	CNST	Q6PJW8	725 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	UGT2A3	Q6UWM9	527 aa		4.99	□□□□□ -1.61

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