RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 EID2Q8N6I1 236 aa13.76□□□□□ -0.21
SHMT2-219ENST00000555563 TFB1MQ8WVM0 346 aaKnown RBP13.76□□□□□ -0.21
SHMT2-219ENST00000555563 P3H4Q92791 437 aa13.76□□□□□ -0.21
SHMT2-219ENST00000555563 SCRN2Q96FV2 425 aa13.76□□□□□ -0.21
SHMT2-219ENST00000555563 AGAP3Q96P47 875 aa13.76□□□□□ -0.21
SHMT2-219ENST00000555563 SMIM14Q96QK8 99 aa13.76□□□□□ -0.21
SHMT2-219ENST00000555563 HEMGNQ9BXL5 484 aa13.76□□□□□ -0.21
SHMT2-219ENST00000555563 TOR4AQ9NXH8 423 aa13.76□□□□□ -0.21
SHMT2-219ENST00000555563 WASF3Q9UPY6 502 aa13.76□□□□□ -0.21
SHMT2-219ENST00000555563 CHKBQ9Y259 395 aa13.76□□□□□ -0.21
SHMT2-219ENST00000555563 OR1A2Q9Y585 309 aa13.76□□□□□ -0.21
SHMT2-219ENST00000555563 CAPN6Q9Y6Q1 641 aa13.76□□□□□ -0.21
SHMT2-219ENST00000555563 LRP4O75096 1905 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 A0A0U1RQS6 177 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 CAPN8A6NHC0 703 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 H3BM21 787 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 TOR1BO14657 336 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 FFAR2O15552 330 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 TNFSF14O43557 240 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 FTCDO95954 541 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 PRLP01236 227 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 CSF2P04141 144 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 SPINK2P20155 84 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 CA4P22748 312 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 DGKAP23743 735 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 NFKBIAP25963 317 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 PTPN3P26045 913 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 PTPN7P35236 360 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 PEX5P50542 639 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 RWDD2BP57060 319 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 COPS2P61201 443 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 YPEL5P62699 121 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 SKOR1P84550 965 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 SHC2P98077 582 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 MTM1Q13496 603 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 INPP5AQ14642 412 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 DENND2CQ68D51 928 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 MACC1Q6ZN28 852 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 BZW1Q7L1Q6 419 aaKnown RBP13.75□□□□□ -0.21
SHMT2-219ENST00000555563 PEX26Q7Z412 305 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 HSD11B1LQ7Z5J1 315 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 ZC3H18Q86VM9 953 aaKnown RBP13.75□□□□□ -0.21
SHMT2-219ENST00000555563 SYCE1Q8N0S2 351 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 SLC25A45Q8N413 288 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 PNPLA1Q8N8W4 532 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 PLA2G15Q8NCC3 412 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 CCDC112Q8NEF3 446 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 LPCAT1Q8NF37 534 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 NUS1Q96E22 293 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 CNDP2Q96KP4 475 aaKnown RBP13.75□□□□□ -0.21
SHMT2-219ENST00000555563 COQ10AQ96MF6 247 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 QKIQ96PU8 341 aaKnown RBP eCLIP13.75□□□□□ -0.21
SHMT2-219ENST00000555563 PCDH9Q9HC56 1237 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 KLF15Q9UIH9 416 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 PNMA8BQ9ULN7 279 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-219ENST00000555563 PACSIN2Q9UNF0 486 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-219ENST00000555563 APOBEC2Q9Y235 224 aaKnown RBP13.75□□□□□ -0.21
SHMT2-219ENST00000555563 PPIL1Q9Y3C6 166 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 ADGRG1Q9Y653 693 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 CFAP47Q6ZTR5 3102 aa13.75□□□□□ -0.21
SHMT2-219ENST00000555563 A0A0J9YYE9 177 aa13.74□□□□□ -0.21
SHMT2-219ENST00000555563 APOC4-APOC2K7ER74 178 aa13.74□□□□□ -0.21
SHMT2-219ENST00000555563 TRIM38O00635 465 aa13.74□□□□□ -0.21
SHMT2-219ENST00000555563 ARHGAP6O43182 974 aa13.74□□□□□ -0.21
SHMT2-219ENST00000555563 HYAL3O43820 417 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-219ENST00000555563 TRBC1P01850 177 aa13.74□□□□□ -0.21
SHMT2-219ENST00000555563 APOC2P02655 101 aa13.74□□□□□ -0.21
SHMT2-219ENST00000555563 HNF1BP35680 557 aa13.74□□□□□ -0.21
SHMT2-219ENST00000555563 ETV3P41162 512 aa13.74□□□□□ -0.21
SHMT2-219ENST00000555563 EPHB1P54762 984 aa13.74□□□□□ -0.21
SHMT2-219ENST00000555563 RPL26P61254 145 aaKnown RBP13.74□□□□□ -0.21
SHMT2-219ENST00000555563 HNRNPKP61978 463 aaKnown RBP eCLIP13.74□□□□□ -0.21
SHMT2-219ENST00000555563 WASHC5Q12768 1159 aa13.74□□□□□ -0.21
SHMT2-219ENST00000555563 ARHGEF7Q14155 803 aa13.74□□□□□ -0.21
SHMT2-219ENST00000555563 PTK2BQ14289 1009 aa13.74□□□□□ -0.21
SHMT2-219ENST00000555563 NFATC4Q14934 902 aa13.74□□□□□ -0.21
SHMT2-219ENST00000555563 CCDC181Q5TID7 509 aa13.74□□□□□ -0.21
SHMT2-219ENST00000555563 LRRC66Q68CR7 880 aa13.74□□□□□ -0.21
SHMT2-219ENST00000555563 AADACL2Q6P093 401 aa13.74□□□□□ -0.21
SHMT2-219ENST00000555563 SLCO6A1Q86UG4 719 aa13.74□□□□□ -0.21
SHMT2-219ENST00000555563 PHACTR4Q8IZ21 702 aa13.74□□□□□ -0.21
SHMT2-219ENST00000555563 RBFAQ8N0V3 343 aa13.74□□□□□ -0.21
SHMT2-219ENST00000555563 PELI3Q8N2H9 469 aa13.74□□□□□ -0.21
SHMT2-219ENST00000555563 ZNF548Q8NEK5 533 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-219ENST00000555563 DTD2Q96FN9 168 aa13.74□□□□□ -0.21
SHMT2-219ENST00000555563 IMP4Q96G21 291 aaKnown RBP13.74□□□□□ -0.21
SHMT2-219ENST00000555563 RBM15Q96T37 977 aaKnown RBP eCLIP13.74□□□□□ -0.21
SHMT2-219ENST00000555563 OSBPL8Q9BZF1 889 aa13.74□□□□□ -0.21
SHMT2-219ENST00000555563 AMFRQ9UKV5 643 aa13.74□□□□□ -0.21
SHMT2-219ENST00000555563 RPL26L1Q9UNX3 145 aaKnown RBP13.74□□□□□ -0.21
SHMT2-219ENST00000555563 PSMD11O00231 422 aa13.73□□□□□ -0.21
SHMT2-219ENST00000555563 ENC1O14682 589 aa13.73□□□□□ -0.21
SHMT2-219ENST00000555563 TRIM16O95361 564 aa13.73□□□□□ -0.21
SHMT2-219ENST00000555563 LDOC1O95751 146 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-219ENST00000555563 GIMD1P0DJR0 217 aa13.73□□□□□ -0.21
SHMT2-219ENST00000555563 PYGMP11217 842 aa13.73□□□□□ -0.21
SHMT2-219ENST00000555563 JUNDP17535 347 aa13.73□□□□□ -0.21
SHMT2-219ENST00000555563 DNAJC3Q13217 504 aa13.73□□□□□ -0.21
SHMT2-219ENST00000555563 ZNF211Q13398 564 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-219ENST00000555563 NOMO1Q15155 1222 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms