RNA–Protein interactions for RNA: ENST00000553923.1

SRP54-204, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-204ENST00000553923 RSF1Q96T23 1441 aaPredicted RBP2.41□□□□□ -2.02
SRP54-204ENST00000553923 IGKV3D-20A0A0C4DH25 116 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 KIF28PB7ZC32 967 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 PTGES3LE9PB15 166 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 PEX12O00623 359 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 HSPB6O14558 160 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 PTP4A3O75365 173 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 FAM155BO75949 473 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 AMBPP02760 352 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 AFPP02771 609 aaKnown RBP2.4□□□□□ -2.03
SRP54-204ENST00000553923 PTMAP06454 111 aaKnown RBP2.4□□□□□ -2.03
SRP54-204ENST00000553923 ZNF883P0CG24 379 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 ACADMP11310 421 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 KRT5P13647 590 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 PORP16435 677 aaPredicted RBP2.4□□□□□ -2.03
SRP54-204ENST00000553923 AZU1P20160 251 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 DGKAP23743 735 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 MAPK4P31152 587 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 ABCD1P33897 745 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 HOXD13P35453 343 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 FAM3BP58499 235 aaPredicted RBP2.4□□□□□ -2.03
SRP54-204ENST00000553923 PPARDQ03181 441 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 ST3GAL1Q11201 340 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 WASHC5Q12768 1159 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 MAMLD1Q13495 774 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 DCTN2Q13561 401 aaKnown RBP2.4□□□□□ -2.03
SRP54-204ENST00000553923 BECN1Q14457 450 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 TBCEQ15813 527 aaPredicted RBP2.4□□□□□ -2.03
SRP54-204ENST00000553923 NFIL3Q16649 462 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 CTXN3Q4LDR2 81 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 HECTD3Q5T447 861 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 MAP3K21Q5TCX8 1036 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 KLHL24Q6TFL4 600 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 TMTC3Q6ZXV5 915 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 MON1BQ7L1V2 547 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 CCDC91Q7Z6B0 441 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 ANKS1BQ7Z6G8 1248 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 CNTROBQ8N137 903 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 TTC39CQ8N584 583 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 NGEFQ8N5V2 710 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 NKAIN3Q8N8D7 197 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 MIGA1Q8NAN2 632 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 MSANTD4Q8NCY6 345 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 ZMIZ2Q8NF64 920 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 CLEC4CQ8WTT0 213 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 TBC1D22AQ8WUA7 517 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 RBM17Q96I25 401 aaKnown RBP2.4□□□□□ -2.03
SRP54-204ENST00000553923 CDHR1Q96JP9 859 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 JAKMIP1Q96N16 626 aaKnown RBP2.4□□□□□ -2.03
SRP54-204ENST00000553923 TWNKQ96RR1 684 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 LBHD1Q9BQE6 289 aaPredicted RBP2.4□□□□□ -2.03
SRP54-204ENST00000553923 REEP2Q9BRK0 252 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 TRMT61BQ9BVS5 477 aaKnown RBP2.4□□□□□ -2.03
SRP54-204ENST00000553923 UBTD1Q9HAC8 227 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 VEZTQ9HBM0 779 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 CCDC177Q9NQR7 707 aaPredicted RBP2.4□□□□□ -2.03
SRP54-204ENST00000553923 DIAPH3Q9NSV4 1193 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 ARL15Q9NXU5 204 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 CHORDC1Q9UHD1 332 aaPredicted RBP2.4□□□□□ -2.03
SRP54-204ENST00000553923 DERAQ9Y315 318 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 RAP2CQ9Y3L5 183 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 SRPRBQ9Y5M8 271 aaKnown RBP2.4□□□□□ -2.03
SRP54-204ENST00000553923 COPG1Q9Y678 874 aaKnown RBP2.4□□□□□ -2.03
SRP54-204ENST00000553923 CYP46A1Q9Y6A2 500 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 SMAD5-AS1Q9Y6J3 95 aa2.4□□□□□ -2.03
SRP54-204ENST00000553923 TCRBV7S3A2A0A539 114 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 A8MV72 311 aaPredicted RBP2.39□□□□□ -2.03
SRP54-204ENST00000553923 H7C0S8 307 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 EDIL3O43854 480 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 TBCAO75347 108 aaKnown RBP2.39□□□□□ -2.03
SRP54-204ENST00000553923 TSPAN9O75954 239 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 BEST1O76090 585 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 TGDSO95455 350 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 LARGE1O95461 756 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 CLDN7O95471 211 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 NFKBIAP25963 317 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 C21orf33P30042 268 aaPredicted RBP2.39□□□□□ -2.03
SRP54-204ENST00000553923 NNMTP40261 264 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 DPP6P42658 865 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 CYP2J2P51589 502 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 CDH12P55289 794 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 NLRP5P59047 1200 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 IFI35P80217 286 aaPredicted RBP2.39□□□□□ -2.03
SRP54-204ENST00000553923 CREB5Q02930 508 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 SF3A3Q12874 501 aaKnown RBP eCLIP2.39□□□□□ -2.03
SRP54-204ENST00000553923 EIF4A2Q14240 407 aaKnown RBP2.39□□□□□ -2.03
SRP54-204ENST00000553923 CTTNQ14247 550 aaKnown RBP2.39□□□□□ -2.03
SRP54-204ENST00000553923 BMP2KLQ5H9B9 411 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 SNX30Q5VWJ9 437 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 GPR139Q6DWJ6 353 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 SLC30A9Q6PML9 568 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 TUBA1AQ71U36 451 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 SZRD1Q7Z422 152 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 TMEM200AQ86VY9 491 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 DIS3L2Q8IYB7 885 aaKnown RBP2.39□□□□□ -2.03
SRP54-204ENST00000553923 PGBD5Q8N414 524 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 ANKRD44Q8N8A2 993 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 KCTD6Q8NC69 237 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 AFAP1L1Q8TED9 768 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 HMGB4Q8WW32 186 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms